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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195775 (24 seq.)
>A171003580
CP004144
Euryarchaeota
Methanosarcina mazei Tuc01 [CP004144]
149772
149845
+
Val
GAC
-
¡û
>A171004531
CP009501
Euryarchaeota
Methanosarcina thermophila TM-1 [CP009501]
2512477
2512403
-
Val
CAC
-
¡û
>A171004581
CP009502
Euryarchaeota
Methanosarcina thermophila CHTI-55 [CP009502]
1529550
1529624
+
Val
CAC
-
¡û
>A171004711
CP009504
Euryarchaeota
Methanosarcina sp. WH1 [CP009504]
373723
373649
-
Val
CAC
-
¡û
>A171005172
CP009514
Euryarchaeota
Methanosarcina mazei C16 [CP009514]
1773382
1773308
-
Val
CAC
-
¡û
>WENV181412936
OGCK01016411
[OGCK] hot springs metagenome; hot spring sediment
1331
1258
-
Val
CAC
[ENA]
¢þ
>WENV183514299
OMKS01015540
[OMKS] sediment metagenome; hot spring sediment
3270
3194
-
Val
CAC
[ENA]
¢þ
>WENV170689642
LFRM01305096
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
14853
14927
+
Val
CAC
[ENA]
¢þ
>W1910230914
FPAO01000011
Euryarchaeota
Methanosarcina thermophila DSM 11855 [FPAO]
91123
91049
-
Val
CAC
[ENA]
¡û
>W1910569457
JJOV01000071
Euryarchaeota
Methanosarcina sp. 2.H.A.1B.4 [JJOV]
18468
18542
+
Val
CAC
[ENA]
¡û
>W1910570081
JJPH01000115
Euryarchaeota
Methanosarcina mazei 3.F.A.2.7 [JJPH]
13045
12971
-
Val
CAC
[ENA]
¡û
>W1910570128
JJPI01000088
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.1 [JJPI]
77798
77724
-
Val
CAC
[ENA]
¡û
>W1910570212
JJPK01000028
Euryarchaeota
Methanosarcina mazei 3.F.T.1A.4 [JJPK]
2402
2328
-
Val
CAC
[ENA]
¡û
>W1910571081
JJQB01000093
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.3 [JJQB]
13049
12975
-
Val
CAC
[ENA]
¡û
>W1910571106
JJQC01000017
Euryarchaeota
Methanosarcina mazei 1.F.A.1B.4 [JJQC]
29173
29099
-
Val
CAC
[ENA]
¡û
>W1910571165
JJQD01000054
Euryarchaeota
Methanosarcina mazei 1.F.A.2.8 [JJQD]
19317
19391
+
Val
CAC
[ENA]
¡û
>W1911581313
PGCL01000001
Euryarchaeota
Methanofollis fontis FWC-SCC2 [PGCL]
543844
543769
-
Val
CAC
[ENA]
¡û
>W1911675943
QGMZ01000008
Euryarchaeota
Methanospirillum stamsii Pt1 [QGMZ]
102169
102244
+
Val
CAC
[ENA]
¡û
>W1610000182
AALU01000011
Euryarchaeota
Methanospirillum hungatei JF-1 [AALU]
6694
6767
+
Val
CAC
[ENA]
¡û
>W1610003500
AGCO01000007
Euryarchaeota
Methanofollis liminatans DSM 4140 [AGCO]
964493
964568
+
Val
CAC
[ENA]
¡û
>W1610046916
BBCW01000072
Euryarchaeota
Methanosarcina horonobensis HB-1 = JCM 15518 [BBCW]
19007
18933
-
Val
CAC
[ENA]
¡û
>W1610605114
LFRP01000035
Euryarchaeota
Methanosarcina sp. DTU009 [LFRP]
14853
14927
+
Val
CAC
[ENA]
¡û
>W1610670247
LKAZ01000036
Euryarchaeota
Methanosarcina flavescens E03.2 [LKAZ]
12974
13048
+
Val
CAC
[ENA]
¡û
>W1610685956
LKUD01000065
Euryarchaeota
Methanoculleus sp. SDB [LKUD]
1
74
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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