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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195824 (150 seq.)
>W1711294104
LZZC01000253
Bacillota
Clostridium beijerinckii [LZZC]
223
299
+
Ile
GAT
[ENA]
¡û
>W1711294107
LZZC01000260
Bacillota
Clostridium beijerinckii [LZZC]
309
385
+
Ile
GAT
[ENA]
¡û
>W1711320510
MBAF01000100
Bacillota
Clostridium beijerinckii [MBAF]
551
475
-
Ile
GAT
[ENA]
¡û
>W1712081380
NHOC01000001
Bacillota
Butyricicoccus porcorum BB10 [NHOC]
2820
2744
-
Ile
GAT
[ENA]
¡û
>W1712081405
NHOC01000005
Bacillota
Butyricicoccus porcorum BB10 [NHOC]
1863
1787
-
Ile
GAT
[ENA]
¡û
>W1712081409
NHOC01000008
Bacillota
Butyricicoccus porcorum BB10 [NHOC]
122846
122770
-
Ile
GAT
[ENA]
¡û
>W1712096547
NHZR01000005
Bacillota
Clostridium diolis [NHZR]
309
385
+
Ile
GAT
[ENA]
¡û
>W1712096620
NHZR01000039
Bacillota
Clostridium diolis [NHZR]
1090
1014
-
Ile
GAT
[ENA]
¡û
>C171045978
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
170411
170487
+
Ile
GAT
-
¡û
>C171046007
CP016092
Bacillota
Clostridium saccharobutylicum NCP 195 [CP016092]
475370
475446
+
Ile
GAT
-
¡û
>w021225
AAVL02000026
Bacillota
Eubacterium ventriosum ATCC 27560 [AAVL]
67065
66992
-
Ile
GAT
[ENA]
¡û
>w021201
AAVL02000012
Bacillota
Eubacterium ventriosum ATCC 27560 [AAVL]
477
553
+
Ile
GAT
[ENA]
¡û
>WENV180129451
OATC01006979
[OATC] human gut metagenome; faeces
162
238
+
Ile
GAT
[ENA]
¢þ
>WENV180328442
OBKU01030465
[OBKU] human gut metagenome; human gut
292
367
+
Ile
GAT
[ENA]
¢þ
>WENV180332086
OBLC01028527
[OBLC] human gut metagenome; human gut
204
279
+
Ile
GAT
[ENA]
¢þ
>WENV180337920
OBLG01197540
[OBLG] human gut metagenome; human gut
245
170
-
Ile
GAT
[ENA]
¢þ
>WENV180413678
OBVB01049435
[OBVB] human gut metagenome; faeces
1
77
+
Ile
GAT
[ENA]
¢þ
>WENV180417282
OBVH01005483
[OBVH] human gut metagenome; faeces
1659
1584
-
Ile
GAT
[ENA]
¢þ
>WENV180471813
OBYP01004037
[OBYP] human gut metagenome; faeces
313
388
+
Ile
GAT
[ENA]
¢þ
>WENV180520114
OCHE01013696
[OCHE] human gut metagenome; human gut
1897
1824
-
Ile
GAT
[ENA]
¢þ
>WENV180534982
OCHM01189885
[OCHM] human gut metagenome; human gut
100
25
-
Ile
GAT
[ENA]
¢þ
>WENV180547325
OCIU01025282
[OCIU] human gut metagenome; human gut
161
236
+
Ile
GAT
[ENA]
¢þ
>WENV180563349
OCLC01016871
[OCLC] human gut metagenome; human gut
561
636
+
Ile
GAT
[ENA]
¢þ
>WENV180577881
OCMB01001092
[OCMB] human gut metagenome; human gut
2498
2423
-
Ile
GAT
[ENA]
¢þ
>WENV180603319
OCPR01135524
[OCPR] human gut metagenome; human gut
76
1
-
Ile
GAT
[ENA]
¢þ
>WENV180606214
OCPT01007514
[OCPT] human gut metagenome; human gut
779
853
+
Ile
GAT
[ENA]
¢þ
>WENV180631962
OCQY01117593
[OCQY] human gut metagenome; human gut
238
311
+
Ile
GAT
[ENA]
¢þ
>WENV180648960
OCSJ01213510
[OCSJ] human gut metagenome; human gut
27
100
+
Ile
GAT
[ENA]
¢þ
>WENV180649625
OCSK01092973
[OCSK] human gut metagenome; human gut
357
283
-
Ile
GAT
[ENA]
¢þ
>WENV180723876
ODGN01099586
[ODGN] human metagenome; G_DNA_Stool
149
75
-
Ile
GAT
[ENA]
¢þ
>WENV180754015
ODHT01086960
[ODHT] human metagenome; G_DNA_Stool
463
536
+
Ile
GAT
[ENA]
¢þ
>WENV180886757
ODME01183803
[ODME] human metagenome; G_DNA_Stool
198
124
-
Ile
GAT
[ENA]
¢þ
>WENV180894351
ODMR01063534
[ODMR] human metagenome; G_DNA_Stool
245
320
+
Ile
GAT
[ENA]
¢þ
>WENV180963053
ODUN01058031
[ODUN] human metagenome; G_DNA_Stool
547
471
-
Ile
GAT
[ENA]
¢þ
>WENV180976703
ODUY01205013
[ODUY] human metagenome; G_DNA_Supragingival plaque
254
180
-
Ile
GAT
[ENA]
¢þ
>WENV181062262
ODYN01102424
[ODYN] human metagenome; G_DNA_Stool
253
326
+
Ile
GAT
[ENA]
¢þ
>W08002440
ABEY02000013
Bacillota
Coprococcus eutactus ATCC 27759 [ABEY]
1074
1149
+
Ile
GAT
[ENA]
¡û
>W08002444
ABEY02000015
Bacillota
Coprococcus eutactus ATCC 27759 [ABEY]
1887
1812
-
Ile
GAT
[ENA]
¡û
>W08002477
ABEY02000028
Bacillota
Coprococcus eutactus ATCC 27759 [ABEY]
2067
2142
+
Ile
GAT
[ENA]
¡û
>WENV181398227
OFSD01040781
[OFSD] human gut metagenome; human gut
252
325
+
Ile
GAT
[ENA]
¢þ
>WENV181427187
OGCQ01042915
[OGCQ] human gut metagenome; human gut
979
904
-
Ile
GAT
[ENA]
¢þ
>WENV181480219
OGFG01036916
[OGFG] metagenome; Human gut stool
1107
1033
-
Ile
GAT
[ENA]
¢þ
>WENV181504214
OGGJ01036912
[OGGJ] metagenome; Human gut stool
1122
1049
-
Ile
GAT
[ENA]
¢þ
>WENV181535418
OGHU01024885
[OGHU] metagenome; Human gut stool
592
666
+
Ile
GAT
[ENA]
¢þ
>WENV181549834
OGIL01010832
[OGIL] metagenome; Human gut stool
598
672
+
Ile
GAT
[ENA]
¢þ
>WENV181591222
OGKO01014151
[OGKO] metagenome; Human gut stool
1301
1226
-
Ile
GAT
[ENA]
¢þ
>WENV181631629
OGMS01008089
[OGMS] metagenome; Human gut stool
598
524
-
Ile
GAT
[ENA]
¢þ
>WENV181654421
OGNZ01010865
[OGNZ] metagenome; Human gut stool
963
890
-
Ile
GAT
[ENA]
¢þ
>WENV181680318
OGOS01040183
[OGOS] human gut metagenome; faeces
283
357
+
Ile
GAT
[ENA]
¢þ
>WENV181690355
OGOY01048305
[OGOY] human gut metagenome; faeces
715
641
-
Ile
GAT
[ENA]
¢þ
>WENV181720659
OGPU01036107
[OGPU] human gut metagenome; faeces
908
835
-
Ile
GAT
[ENA]
¢þ
>WENV181762121
OGQW01032488
[OGQW] human gut metagenome; faeces
965
890
-
Ile
GAT
[ENA]
¢þ
>WENV181785280
OGRM01014847
[OGRM] human gut metagenome; faeces
63
137
+
Ile
GAT
[ENA]
¢þ
>WENV181822020
OGUF01012660
[OGUF] metagenome; Human gut stool
252
325
+
Ile
GAT
[ENA]
¢þ
>WENV181904973
OGXX01056666
[OGXX] human gut metagenome; faeces
748
674
-
Ile
GAT
[ENA]
¢þ
>WENV181977340
OHAD01052354
[OHAD] human gut metagenome; faeces
689
616
-
Ile
GAT
[ENA]
¢þ
>WENV182012724
OHBM01079153
[OHBM] human gut metagenome; faeces
665
591
-
Ile
GAT
[ENA]
¢þ
>WENV182025368
OHCI01002029
[OHCI] human gut metagenome; feces
2459
2385
-
Ile
GAT
[ENA]
¢þ
>WENV182027098
OHCL01017054
[OHCL] human gut metagenome; feces
63
137
+
Ile
GAT
[ENA]
¢þ
>WENV182061377
OHET01023506
[OHET] human gut metagenome; feces
802
728
-
Ile
GAT
[ENA]
¢þ
>WENV182067288
OHFD01005964
[OHFD] human gut metagenome; feces
149
224
+
Ile
GAT
[ENA]
¢þ
>WENV182082765
OHGL01018401
[OHGL] human gut metagenome; feces
683
610
-
Ile
GAT
[ENA]
¢þ
>WENV182115422
OHJA01004988
[OHJA] human gut metagenome; feces
2453
2380
-
Ile
GAT
[ENA]
¢þ
>WENV182125535
OHJS01011296
[OHJS] human gut metagenome; feces
831
906
+
Ile
GAT
[ENA]
¢þ
>WENV182139106
OHKO01012365
[OHKO] human gut metagenome; feces
1054
980
-
Ile
GAT
[ENA]
¢þ
>WENV182152517
OHLL01018653
[OHLL] human gut metagenome; feces
295
221
-
Ile
GAT
[ENA]
¢þ
>WENV182160662
OHME01014154
[OHME] human gut metagenome; feces
963
890
-
Ile
GAT
[ENA]
¢þ
>WENV182172562
OHMY01016804
[OHMY] human gut metagenome; feces
695
769
+
Ile
GAT
[ENA]
¢þ
>WENV182178965
OHNM01015405
[OHNM] human gut metagenome; feces
742
668
-
Ile
GAT
[ENA]
¢þ
>WENV182184837
OHOA01002478
[OHOA] human gut metagenome; feces
3229
3155
-
Ile
GAT
[ENA]
¢þ
>WENV182189582
OHOO01014032
[OHOO] human gut metagenome; feces
946
873
-
Ile
GAT
[ENA]
¢þ
>WENV182196558
OHPF01023506
[OHPF] human gut metagenome; feces
802
728
-
Ile
GAT
[ENA]
¢þ
>WENV182206883
OHPV01027078
[OHPV] human gut metagenome; feces
520
447
-
Ile
GAT
[ENA]
¢þ
>WENV182241495
OHSF01040081
[OHSF] human gut metagenome; feces
51
124
+
Ile
GAT
[ENA]
¢þ
>WENV182242951
OHSH01010039
[OHSH] human gut metagenome; feces
346
420
+
Ile
GAT
[ENA]
¢þ
>WENV182259497
OHTH01061537
[OHTH] human gut metagenome; feces
275
349
+
Ile
GAT
[ENA]
¢þ
>WENV182261372
OHTK01018872
[OHTK] human gut metagenome; feces
252
325
+
Ile
GAT
[ENA]
¢þ
>WENV182265655
OHTW01010418
[OHTW] human gut metagenome; feces
1109
1035
-
Ile
GAT
[ENA]
¢þ
>WENV182271395
OHUF01022320
[OHUF] human gut metagenome; feces
946
873
-
Ile
GAT
[ENA]
¢þ
>WENV182309789
OHXK01016423
[OHXK] human gut metagenome; feces
991
918
-
Ile
GAT
[ENA]
¢þ
>WENV182340694
OIAE01018688
[OIAE] human gut metagenome; feces
813
739
-
Ile
GAT
[ENA]
¢þ
>WENV182365605
OICJ01004259
[OICJ] human gut metagenome; feces
263
338
+
Ile
GAT
[ENA]
¢þ
>WENV182372353
OICV01024697
[OICV] human gut metagenome; feces
63
136
+
Ile
GAT
[ENA]
¢þ
>WENV182374605
OIDB01008062
[OIDB] human gut metagenome; feces
396
471
+
Ile
GAT
[ENA]
¢þ
>WENV182380073
OIDN01003289
[OIDN] human gut metagenome; feces
2224
2149
-
Ile
GAT
[ENA]
¢þ
>WENV182399159
OIEN01033969
[OIEN] human gut metagenome; human gut
963
888
-
Ile
GAT
[ENA]
¢þ
>WENV182447261
OILE01009892
[OILE] human gut metagenome; human gut
270
344
+
Ile
GAT
[ENA]
¢þ
>WENV182650308
OJMG01075328
[OJMG] human gut metagenome; feces
577
504
-
Ile
GAT
[ENA]
¢þ
>WENV182669415
OJNJ01060780
[OJNJ] human gut metagenome; feces
608
533
-
Ile
GAT
[ENA]
¢þ
>WENV182693753
OJOH01004732
[OJOH] human gut metagenome; stool sample
3837
3762
-
Ile
GAT
[ENA]
¢þ
>WENV182700488
OJOO01058077
[OJOO] human gut metagenome; human gut
161
236
+
Ile
GAT
[ENA]
¢þ
>WENV182762583
OJRN01027994
[OJRN] human gut metagenome; stool sample
423
497
+
Ile
GAT
[ENA]
¢þ
>WENV182852601
OKLZ01000239
[OKLZ] human gut metagenome; human gut
2286
2362
+
Ile
GAT
[ENA]
¢þ
>WENV182885673
OKSC01016468
[OKSC] human gut metagenome; faeces
2335
2262
-
Ile
GAT
[ENA]
¢þ
>WENV182895116
OKSM01002509
[OKSM] human gut metagenome; feces
4816
4742
-
Ile
GAT
[ENA]
¢þ
>WENV182918663
OKTW01024217
[OKTW] human gut metagenome; feces
877
804
-
Ile
GAT
[ENA]
¢þ
>WENV182923396
OKUE01031279
[OKUE] human gut metagenome; feces
4
78
+
Ile
GAT
[ENA]
¢þ
>WENV182928089
OKUN01011906
[OKUN] human gut metagenome; feces
308
383
+
Ile
GAT
[ENA]
¢þ
>WENV182935306
OKUZ01006661
[OKUZ] human gut metagenome; feces
1109
1035
-
Ile
GAT
[ENA]
¢þ
>WENV182939036
OKVE01009318
[OKVE] human gut metagenome; human gut
259
334
+
Ile
GAT
[ENA]
¢þ
>WENV182972801
OKXI01090188
[OKXI] human gut metagenome; human gut
437
361
-
Ile
GAT
[ENA]
¢þ
>WENV183049871
OLGH01035516
[OLGH] human gut metagenome; faeces
1018
943
-
Ile
GAT
[ENA]
¢þ
>WENV183086294
OLJF01031511
[OLJF] metagenome; faeces
211
286
+
Ile
GAT
[ENA]
¢þ
>WENV183165604
OLOX01009226
[OLOX] human gut metagenome; faeces
246
319
+
Ile
GAT
[ENA]
¢þ
>WENV183411207
OMAK01013063
[OMAK] human gut metagenome; feces
1049
974
-
Ile
GAT
[ENA]
¢þ
>WENV183416935
OMAS01025152
[OMAS] human gut metagenome; feces
994
920
-
Ile
GAT
[ENA]
¢þ
>WENV183422118
OMBD01008915
[OMBD] human gut metagenome; feces
239
313
+
Ile
GAT
[ENA]
¢þ
>WENV183435632
OMCA01026549
[OMCA] human gut metagenome; feces
59
133
+
Ile
GAT
[ENA]
¢þ
>WENV183477942
OMFC01043719
[OMFC] human gut metagenome; feces
591
516
-
Ile
GAT
[ENA]
¢þ
>WENV183495929
OMGL01038306
[OMGL] human gut metagenome; human gut
585
660
+
Ile
GAT
[ENA]
¢þ
>WENV183542638
OOAM01012106
[OOAM] human gut metagenome; human gut
1297
1222
-
Ile
GAT
[ENA]
¢þ
>WENV183554306
OOBM01003445
[OOBM] human gut metagenome; human gut
5182
5109
-
Ile
GAT
[ENA]
¢þ
>WENV183560313
OOBT01020463
[OOBT] human gut metagenome; human gut
251
326
+
Ile
GAT
[ENA]
¢þ
>WENV183607565
OODO01015191
[OODO] human gut metagenome; human gut
1587
1513
-
Ile
GAT
[ENA]
¢þ
>WENV183612095
OODT01006120
[OODT] human gut metagenome; human gut
63
136
+
Ile
GAT
[ENA]
¢þ
>WENV183751265
PPYE01006749
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
3032
2958
-
Ile
GAT
[ENA]
¢þ
>WENV170562495
CZCB01003209
[CZCB] anaerobic digester metagenome; anaerobic digester
420
496
+
Ile
GAT
[ENA]
¢þ
>WENV170700061
LIDZ01000693
[LIDZ] food metagenome; wine grapes on drying loft during traditional withering process
1811
1887
+
Ile
GAT
[ENA]
¢þ
>C193001780
CP033465
Bacillota
Clostridium sp. JN-1 [CP033465]
376809
376885
+
Ile
GAT
-
¡û
>C191065520
CP029758
Bacillota
Clostridium sp. AWRP [CP029758]
652386
652462
+
Ile
GAT
-
¡û
>C191065523
CP029758
Bacillota
Clostridium sp. AWRP [CP029758]
686141
686217
+
Ile
GAT
-
¡û
>W09132855
ACOM01000004
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
450009
449933
-
Ile
GAT
[ENA]
¡û
>W09132888
ACOM01000009
Bacillota
Clostridium butyricum E4 str. BoNT E BL5262 [ACOM]
158519
158595
+
Ile
GAT
[ENA]
¡û
>W141803749
JPGY01000001
Bacillota
Clostridium pasteurianum DSM 525 = ATCC 6013 [JPGY]
1329
1405
+
Ile
GAT
[ENA]
¡û
>C09103274
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
173689
173765
+
Ile
GAT
[Ensembl]
¡û
>C09103280
AP009049
Bacillota
Clostridium kluyveri NBRC 12016 [AP009049]
956999
957075
+
Ile
GAT
[Ensembl]
¡û
>W1910637962
LRDH01000045
Bacillota
Clostridium butyricum 300064 [LRDH]
233
157
-
Ile
GAT
[ENA]
¡û
>W1911159973
NPMX01000031
Bacillota
Clostridium botulinum 202F [NPMX]
758
682
-
Ile
GAT
[ENA]
¡û
>W1911695179
QMBF01000039
Bacillota
Clostridium tetani 329 [QMBF]
266
342
+
Ile
GAT
[ENA]
¡û
>W1911728755
QTMQ01000014
Bacillota
Clostridium sp. AF15-41 [QTMQ]
74997
75072
+
Ile
GAT
[ENA]
¡û
>W1810878257
QUIB01000030
Bacillota
Clostridium sp. AM46-21 [QUIB]
607
532
-
Ile
GAT
[ENA]
¡û
>W1810878259
QUIB01000032
Bacillota
Clostridium sp. AM46-21 [QUIB]
550
476
-
Ile
GAT
[ENA]
¡û
>W1810882674
QULF01000006
Bacillota
Clostridium sp. OM05-9 [QULF]
3454
3380
-
Ile
GAT
[ENA]
¡û
>W1810882678
QULF01000014
Bacillota
Clostridium sp. OM05-9 [QULF]
330
256
-
Ile
GAT
[ENA]
¡û
>C151070121
CP010520
Bacillota
Clostridium botulinum NCTC 8266 [CP010520]
195309
195385
+
Ile
GAT
[Ensembl]
¡û
>C151070145
CP010520
Bacillota
Clostridium botulinum NCTC 8266 [CP010520]
422199
422275
+
Ile
GAT
[Ensembl]
¡û
>W1511350203
JRMA01000001
Bacillota
Clostridium butyricum INCQS635 [JRMA]
12040
12116
+
Ile
GAT
[ENA]
¡û
>W1511399447
JTER01000049
Bacillota
Clostridium tyrobutyricum FAM22552 [JTER]
248
324
+
Ile
GAT
[ENA]
¡û
>W1511501385
JXBT01000001
Bacillota
Clostridium butyricum HM-68 [JXBT]
3613822
3613746
-
Ile
GAT
[ENA]
¡û
>W1511506721
JXMR01000001
Bacillota
Clostridium botulinum NCTC 11219 [JXMR]
1290248
1290324
+
Ile
GAT
[ENA]
¡û
>W1511506745
JXMR01000001
Bacillota
Clostridium botulinum NCTC 11219 [JXMR]
1531288
1531364
+
Ile
GAT
[ENA]
¡û
>W1511580449
LARK01000054
Bacillota
Heliobacterium sp. N15.MGS-306 [LARK]
58
133
+
Ile
GAT
[ENA]
¡û
>W1511699132
LGII01000022
Bacillota
Clostridium botulinum ATCC 23387 [LGII]
225
301
+
Ile
GAT
[ENA]
¡û
>C161023440
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
147929
148005
+
Ile
GAT
[Ensembl]
¡û
>C161023465
CP010086
Bacillota
Clostridium beijerinckii NCIMB 14988 [CP010086]
417956
418032
+
Ile
GAT
[Ensembl]
¡û
>W1610099342
CYYJ01000018
Bacillota
Coprococcus eutactus [CYYJ]
9787
9712
-
Ile
GAT
[ENA]
¡û
>W1611062533
MBAF01000100
Bacillota
Clostridium beijerinckii [MBAF]
551
475
-
Ile
GAT
[ENA]
¡û
>WENV085365
BABC01001153
Gut microbiome of Human (healthy human sample In-B, Infant, Male)
341
419
+
Ile
GAT
[ENA]
>WENV086937
BABG01028445
Gut microbiome of Human (healthy human sample In-R, Adult, Female)
190
268
+
Ile
GAT
[ENA]
>W1710102097
CYYJ01000018
Bacillota
Coprococcus eutactus [CYYJ]
9787
9712
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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