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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195855 (26 seq.)
>W1711091108
LTBC01000013
Bacillota
Moorella mulderi DSM 14980 [LTBC]
12302
12226
-
Asp
GTC
[ENA]
¡û
>W1711352257
MDDB01000002
Bacillota
Moorella thermoacetica [MDDB]
280510
280586
+
Asp
GTC
[ENA]
¡û
>W1711352307
MDDC01000002
Bacillota
Moorella thermoacetica [MDDC]
21840
21916
+
Asp
GTC
[ENA]
¡û
>W1711352360
MDDD01000003
Bacillota
Moorella thermoacetica [MDDD]
41451
41527
+
Asp
GTC
[ENA]
¡û
>W1711352401
MDDE01000001
Bacillota
Moorella thermoacetica [MDDE]
319120
319196
+
Asp
GTC
[ENA]
¡û
>W1711428532
MIHH01000003
Bacillota
Moorella thermoacetica [MIHH]
68128
68204
+
Asp
GTC
[ENA]
¡û
>W1711428592
MIIF01000007
Bacillota
Moorella thermoacetica [MIIF]
12964
13040
+
Asp
GTC
[ENA]
¡û
>C171055207
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
2213934
2213858
-
Asp
GTC
-
¡û
>C171058973
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
1842652
1842576
-
Asp
GTC
-
¡û
>C014191
CP000232
Bacillota
Moorella thermoacetica [CP000232]
1874345
1874269
-
Asp
GTC
[Ensembl]
¡û
>W141229781
BARR01000006
Bacillota
Moorella thermoacetica Y72 [BARR]
121345
121269
-
Asp
GTC
[ENA]
¡û
>WENV170676212
LDZR01001726
[LDZR] terrestrial metagenome; oil reservoir sample K2
17757
17833
+
Asp
GTC
[ENA]
¢þ
>WENV170686547
LFRM01150432
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
217
141
-
Asp
GTC
[ENA]
¢þ
>C191073449
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
1890777
1890701
-
Asp
GTC
-
¡û
>W09100929
AADT03000013
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
59820
59744
-
Asp
GTC
[ENA]
¡û
>W1910180070
BJKN01000002
Bacillota
Moorella sp. E308F [BJKN]
1196441
1196365
-
Asp
GTC
[ENA]
¡û
>W1910180102
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
1986833
1986909
+
Asp
GTC
[ENA]
¡û
>W1810010420
BFFN01000001
Bacillota
Moorella sp. Hama-1 [BFFN]
252990
252914
-
Asp
GTC
[ENA]
¡û
>W1810367275
PVXL01000025
Bacillota
Moorella stamsii DSM 26271 [PVXL]
30293
30369
+
Asp
GTC
[ENA]
¡û
>W1810367354
PVXM01000058
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
49879
49955
+
Asp
GTC
[ENA]
¡û
>C151094377
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
1768855
1768779
-
Asp
GTC
-
¡û
>C151094428
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
1868382
1868306
-
Asp
GTC
-
¡û
>W1510100247
CELZ01000016
Bacillota
Moorella glycerini NMP [CELZ]
29006
29082
+
Asp
GTC
[ENA]
¡û
>W1610612715
LGFA01000017
Bacillota
Moorella sp. 60_41 [LGFA]
17757
17833
+
Asp
GTC
[ENA]
¡û
>W1610925307
LTBC01000013
Bacillota
Moorella mulderi DSM 14980 [LTBC]
12302
12226
-
Asp
GTC
[ENA]
¡û
>W1710734036
LGFA01000017
Bacillota
Moorella sp. 60_41 [LGFA]
17757
17833
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK