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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195855 (15 seq.)
>W1711414471
MGZM01000233
Thermodesulfobacteriota
Geobacteraceae bacterium GWF2_54_21 [MGZM]
339
415
+
Arg
TCT
[ENA]
¡û
>W131111399
APLQ01000014
Gammaproteobacteria
Marinobacter nanhaiticus D15-8W [APLQ]
1281224
1281300
+
Arg
TCT
[ENA]
¡û
>W131171011
ARFX01000031
Gammaproteobacteria
Algicola sagamiensis DSM 14643 [ARFX]
93749
93825
+
Arg
TCT
[ENA]
¡û
>WENV183704921
PDWI01000783
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
43506
43430
-
Arg
TCT
[ENA]
¡û
>WENV183705338
PDWI01001409
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
36436
36360
-
Arg
TCT
[ENA]
¡û
>WENV183717482
PDWJ01000977
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
27812
27736
-
Arg
TCT
[ENA]
¡û
>WENV183717501
PDWJ01001012
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
54462
54538
+
Arg
TCT
[ENA]
¡û
>W1911283874
NTLB01000005
Gammaproteobacteria
Alteromonadaceae bacterium M11-4 [NTLB]
113910
113986
+
Arg
TCT
[ENA]
¡û
>W1810595475
QGEH01000001
Gammaproteobacteria
Marinobacter bohaiensis T17 [QGEH]
1842218
1842294
+
Arg
TCT
[ENA]
¡û
>W2011074934
NTLB01000005
Gammaproteobacteria
Alteromonadaceae bacterium M11-4 [NTLB]
113910
113986
+
Arg
TCT
[ENA]
¡û
>W2011603970
SJDL01000022
Gammaproteobacteria
Marinobacter sp. YJ-S3-2 [SJDL]
41278
41202
-
Arg
TCT
[ENA]
¡û
>W2012430762
WSSA01000002
Gammaproteobacteria
Marinobacter sp. JSM 1782161 [WSSA]
986984
986908
-
Arg
TCT
[ENA]
¡û
>W2110446824
JAERVO010000001
Gammaproteobacteria
Marinobacter sp. CHFG3-1-5 [JAERVO]
421822
421898
+
Arg
TCT
[ENA]
¡û
>C211125392
CP059888
Gammaproteobacteria
Pseudoalteromonas sp. SM1988 [CP059888]
1492743
1492819
+
Arg
TCT
-
¡û
>C241071425
CP043042
Gammaproteobacteria
Marinobacter fonticola CS412 [CP043042]
2628234
2628158
-
Arg
TCT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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