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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195856 (25 seq.)
>W1711091089
LTBC01000002
Bacillota
Moorella mulderi DSM 14980 [LTBC]
353590
353666
+
Arg
CCG
[ENA]
¡û
>W1711352252
MDDB01000001
Bacillota
Moorella thermoacetica [MDDB]
152494
152418
-
Arg
CCG
[ENA]
¡û
>W1711352316
MDDC01000005
Bacillota
Moorella thermoacetica [MDDC]
150101
150177
+
Arg
CCG
[ENA]
¡û
>W1711352354
MDDD01000001
Bacillota
Moorella thermoacetica [MDDD]
152075
151999
-
Arg
CCG
[ENA]
¡û
>W1711352432
MDDE01000004
Bacillota
Moorella thermoacetica [MDDE]
1711
1635
-
Arg
CCG
[ENA]
¡û
>W1711428541
MIHH01000004
Bacillota
Moorella thermoacetica [MIHH]
170318
170394
+
Arg
CCG
[ENA]
¡û
>W1711428572
MIIF01000001
Bacillota
Moorella thermoacetica [MIIF]
196890
196814
-
Arg
CCG
[ENA]
¡û
>C171055213
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
1377156
1377080
-
Arg
CCG
-
¡û
>C171058978
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
1136815
1136739
-
Arg
CCG
-
¡û
>C014196
CP000232
Bacillota
Moorella thermoacetica [CP000232]
1194921
1194845
-
Arg
CCG
[Ensembl]
¡û
>W141229819
BARR01000042
Bacillota
Moorella thermoacetica Y72 [BARR]
175094
175018
-
Arg
CCG
[ENA]
¡û
>WENV170676220
LDZR01001787
[LDZR] terrestrial metagenome; oil reservoir sample K2
2445
2521
+
Arg
CCG
[ENA]
¢þ
>C191073454
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
1199161
1199085
-
Arg
CCG
-
¡û
>W09100935
AADT03000019
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
49640
49564
-
Arg
CCG
[ENA]
¡û
>W1910180078
BJKN01000002
Bacillota
Moorella sp. E308F [BJKN]
538970
538894
-
Arg
CCG
[ENA]
¡û
>W1910180110
BJKO01000001
Bacillota
Moorella sp. E306M [BJKO]
2653054
2653130
+
Arg
CCG
[ENA]
¡û
>W1810367295
PVXL01000055
Bacillota
Moorella stamsii DSM 26271 [PVXL]
55031
55107
+
Arg
CCG
[ENA]
¡û
>W1810367316
PVXM01000004
Bacillota
Moorella humiferrea DSM 23265 [PVXM]
84834
84758
-
Arg
CCG
[ENA]
¡û
>C151094382
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
1089648
1089572
-
Arg
CCG
-
¡û
>C151094433
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
1189183
1189107
-
Arg
CCG
-
¡û
>W1510100288
CELZ01000061
Bacillota
Moorella glycerini NMP [CELZ]
50264
50340
+
Arg
CCG
[ENA]
¡û
>W1610612723
LGFA01000078
Bacillota
Moorella sp. 60_41 [LGFA]
2445
2521
+
Arg
CCG
[ENA]
¡û
>W1610925288
LTBC01000002
Bacillota
Moorella mulderi DSM 14980 [LTBC]
353590
353666
+
Arg
CCG
[ENA]
¡û
>W1710081779
BDGJ01000072
Bacillota
Calderihabitans maritimus [BDGJ]
129
205
+
Arg
CCG
[ENA]
¡û
>W1710734044
LGFA01000078
Bacillota
Moorella sp. 60_41 [LGFA]
2445
2521
+
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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