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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195877 (16 seq.)
>W1710889330
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
277562
277486
-
Pro
GGG
[ENA]
¡û
>W1711043800
LRML01000009
Bacteroidota
Rufibacter roseus [LRML]
21773
21849
+
Pro
GGG
[ENA]
¡û
>W1711043817
LRMM01000004
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
62511
62587
+
Pro
GGG
[ENA]
¡û
>W1711767864
MVBC01000001
Bacteroidota
Hymenobacter sp. CRA2 [MVBC]
598702
598778
+
Pro
GGG
[ENA]
¡û
>WENV170020636
BBPE01015544
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
487
563
+
Pro
GGG
[ENA]
¢þ
>WENV170989030
MWVY01062945
[MWVY] soil metagenome; MS7-5 sample; Antarctic (ecotone) soil
190
114
-
Pro
GGG
[ENA]
¢þ
>C191087873
CP032317
Bacteroidota
Hymenobacter oligotrophus sh-6 [CP032317]
3248576
3248502
-
Pro
GGG
-
¡û
>W1810625913
QHKM01000006
Bacteroidota
Hymenobacter edaphi NL [QHKM]
90984
90910
-
Pro
GGG
[ENA]
¡û
>C151071884
CP010777
Bacteroidota
Rufibacter radiotolerans DG31D [CP010777]
4205032
4205108
+
Pro
GGG
[Ensembl]
¡û
>C161028437
CP010776
Bacteroidota
Rufibacter sp. DG15C [CP010776]
1660549
1660475
-
Pro
GGG
[Ensembl]
¡û
>C161043239
CP012643
Bacteroidota
Rufibacter tibetensis 1351 [CP012643]
1956303
1956379
+
Pro
GGG
[Ensembl]
¡û
>C161076972
CP014766
Bacteroidota
Pontibacter akesuensis AKS 1T [CP014766]
497974
498050
+
Pro
GGG
-
¡û
>W1610749708
LNAL01000008
Bacteroidota
Solirubrum puertoriconensis MC1A [LNAL]
277562
277486
-
Pro
GGG
[ENA]
¡û
>W1610885099
LRML01000009
Bacteroidota
Rufibacter roseus [LRML]
21773
21849
+
Pro
GGG
[ENA]
¡û
>W1610885116
LRMM01000004
Bacteroidota
Rufibacter ruber CCM 8646 [LRMM]
62511
62587
+
Pro
GGG
[ENA]
¡û
>W1710578995
FPCA01000001
Bacteroidota
Pontibacter akesuensis [FPCA]
1377746
1377822
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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