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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195885 (30 seq.)
>C006199
AE002160
Chlamydiota
Chlamydia muridarum str. Nigg [AE002160]
601626
601553
-
Asp
GTC
[Ensembl]
¡û
>WENV180344349
OBLK01355671
[OBLK] soil metagenome; Clay
71
144
+
Asp
GTC
[ENA]
¢þ
>WENV180353354
OBLQ010712665
[OBLQ] soil metagenome; soil
214
289
+
Asp
GTC
[ENA]
¢þ
>WENV180372994
OBOI01173419
[OBOI] sediment metagenome; sediment
398
324
-
Asp
GTC
[ENA]
¢þ
>WENV170558056
CXWL01047796
[CXWL] groundwater metagenome; biofilm material
214
139
-
Asp
GTC
[ENA]
¢þ
>WENV170646098
JQGF01070971
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
100
27
-
Asp
GTC
[ENA]
¢þ
>C181147048
CP027206
Chlamydiota
Chlamydia muridarum str. Nigg [CP027206]
601639
601564
-
Asp
GTC
-
¡û
>C181147085
CP027207
Chlamydiota
Chlamydia muridarum str. Nigg [CP027207]
601626
601551
-
Asp
GTC
-
¡û
>C181147195
CP027210
Chlamydiota
Chlamydia muridarum str. Nigg [CP027210]
601630
601555
-
Asp
GTC
-
¡û
>C181147306
CP027213
Chlamydiota
Chlamydia muridarum str. Nigg [CP027213]
601625
601550
-
Asp
GTC
-
¡û
>C181147343
CP027214
Chlamydiota
Chlamydia muridarum str. Nigg [CP027214]
601622
601547
-
Asp
GTC
-
¡û
>C181147380
CP027215
Chlamydiota
Chlamydia muridarum str. Nigg [CP027215]
601624
601549
-
Asp
GTC
-
¡û
>C181147417
CP027216
Chlamydiota
Chlamydia muridarum str. Nigg [CP027216]
601627
601552
-
Asp
GTC
-
¡û
>C181147454
CP027217
Chlamydiota
Chlamydia muridarum str. Nigg [CP027217]
601635
601560
-
Asp
GTC
-
¡û
>C191008170
CP007217
Chlamydiota
Chlamydia muridarum Nigg3-28 [CP007217]
601630
601555
-
Asp
GTC
-
¡û
>W141740228
JNON01000002
Chlamydiota
Chlamydia muridarum [JNON]
601624
601549
-
Asp
GTC
[ENA]
¡û
>W141740265
JNOO01000001
Chlamydiota
Chlamydia muridarum [JNOO]
601623
601548
-
Asp
GTC
[ENA]
¡û
>W141740302
JNOP01000002
Chlamydiota
Chlamydia muridarum [JNOP]
601623
601548
-
Asp
GTC
[ENA]
¡û
>W141740376
JNOR01000002
Chlamydiota
Chlamydia muridarum [JNOR]
601624
601549
-
Asp
GTC
[ENA]
¡û
>W09133192
ACOV01000003
Chlamydiota
Chlamydia muridarum Nigg [ACOV]
441041
440966
-
Asp
GTC
[ENA]
¡û
>W1910725543
MGLY01000074
Chlamydiota
Chlamydiae bacterium RIFCSPHIGHO2_12_FULL_49_9 [MGLY]
1452
1378
-
Asp
GTC
[ENA]
¡û
>W1911405195
NWQK01000003
Chlamydiota
Candidatus Chlamydia corallus corallus G3/2742-324 [NWQK]
133109
133034
-
Asp
GTC
[ENA]
¡û
>C151015651
CP006974
Chlamydiota
Chlamydia muridarum str. Nigg3 CMUT3-5 [CP006974]
601629
601554
-
Asp
GTC
[Ensembl]
¡û
>C151015688
CP006975
Chlamydiota
Chlamydia muridarum str. Nigg CM972 [CP006975]
601630
601555
-
Asp
GTC
[Ensembl]
¡û
>C151021830
CP007276
Chlamydiota
Chlamydia muridarum str. Nigg 2 MCR [CP007276]
601629
601554
-
Asp
GTC
[Ensembl]
¡û
>C151055417
CP009608
Chlamydiota
Chlamydia muridarum Nigg3 [CP009608]
601630
601555
-
Asp
GTC
[Ensembl]
¡û
>C151055454
CP009609
Chlamydiota
Chlamydia muridarum Nigg3 [CP009609]
601630
601555
-
Asp
GTC
[Ensembl]
¡û
>W10104605
ACUJ01000001
Chlamydiota
Chlamydia muridarum MopnTet14 [ACUJ]
617414
617339
-
Asp
GTC
[ENA]
¡û
>C10103809
CP001713
Chlamydiota
Chlamydia pneumoniae LPCoLN [CP001713]
547148
547073
-
Asp
GTC
[Ensembl]
¡û
>W11106115
ACUJ01000001
Chlamydiota
Chlamydia muridarum MopnTet14 [ACUJ]
617414
617339
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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