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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195945 (17 seq.)
>W1710984162
LPSV01000367
Gammaproteobacteria
Shigella boydii [LPSV]
124
200
+
Ile
GAT
[ENA]
¡û
>W141121719
AVXR01000018
Gammaproteobacteria
Escherichia coli HVH 158 (4-3224287) [AVXR]
50055
49979
-
Ile
GAT
[ENA]
¡û
>WENV182011020
OHBL01030453
[OHBL] human gut metagenome; feces
93
169
+
Ile
GAT
[ENA]
¢þ
>WENV182436583
OIJG01010352
[OIJG] human gut metagenome; human gut
541
465
-
Ile
GAT
[ENA]
¢þ
>C181107576
CP024886
Gammaproteobacteria
Escherichia coli AR_0017 [CP024886]
4565924
4566000
+
Ile
GAT
-
¡û
>C181141625
CP026811
Gammaproteobacteria
Shigella flexneri 64-5500 [CP026811]
2250864
2250788
-
Ile
GAT
-
¡û
>C191196239
LR134136
Gammaproteobacteria
Atlantibacter hermannii NCTC12129 [LR134136]
3453636
3453560
-
Ile
GAT
-
¡û
>C191219978
LR217737
Gammaproteobacteria
Candidatus Erwinia haradaeae ErCipiceae [LR217737]
1043133
1043057
-
Ile
GAT
-
¡û
>C141000030
AP012554
Gammaproteobacteria
Candidatus Pantoea carbekii [AP012554]
580085
580009
-
Ile
GAT
-
¡û
>C141001543
CP003547
Gammaproteobacteria
secondary endosymbiont of Heteropsylla cubana [CP003547]
175584
175660
+
Ile
GAT
[Ensembl]
¡û
>W1910807670
MTXY01000004
Gammaproteobacteria
Escherichia coli HvH-Ec81 [MTXY]
399
323
-
Ile
GAT
[ENA]
¡û
>C151000001
AP010872
Gammaproteobacteria
Candidatus Ishikawaella capsulata Mpkobe [AP010872]
33602
33677
+
Ile
GAT
[Ensembl]
¡û
>C151001741
AP014521
Gammaproteobacteria
Candidatus Tachikawaea gelatinosa UwTKB [AP014521]
389744
389671
-
Ile
GAT
[Ensembl]
¡û
>C151074288
CP010907
Gammaproteobacteria
Candidatus Pantoea carbekii US [CP010907]
75000
74924
-
Ile
GAT
[Ensembl]
¡û
>C121002377
CP002295
Gammaproteobacteria
Serratia symbiotica str. 'Cinara cedri' [CP002295]
1626046
1625970
-
Ile
GAT
[Ensembl]
¡û
>W1610085828
CVRF01000002
Gammaproteobacteria
Candidatus Providencia siddallii [CVRF]
51199
51123
-
Ile
GAT
[ENA]
¡û
>W1710090417
CVRF01000002
Gammaproteobacteria
Candidatus Providencia siddallii [CVRF]
51199
51123
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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