This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.195992 (24 seq.)
>A171000097
AP011952
Euryarchaeota
Methanothermobacter sp. CaT2 [AP011952]
937181
937255
+
Lys
TTT
-
¡û
>A171000906
CP001710
Euryarchaeota
Methanothermobacter marburgensis str. Marburg [CP001710]
1317735
1317809
+
Lys
TTT
-
¡û
>A171004005
CP006933
Euryarchaeota
Methanobacterium formicicum BRM9 [CP006933]
2131657
2131584
-
Lys
TTT
-
¡û
>A171007305
HG425166
Euryarchaeota
Methanobacterium sp. MB1 [HG425166]
224657
224730
+
Lys
TTT
-
¡û
>A171007359
LN515531
Euryarchaeota
Methanobacterium formicicum [LN515531]
1604127
1604200
+
Lys
TTT
-
¡û
>A171007390
LN734822
Euryarchaeota
Methanobacterium formicicum [LN734822]
261160
261233
+
Lys
TTT
-
¡û
>A171007709
LT608329
Euryarchaeota
Methanothermobacter wolfeii [LT608329]
1325343
1325417
+
Lys
TTT
-
¡û
>WENV180036538
FVAA010158817
[FVAA] soil metagenome; Soil
767
693
-
Lys
TTT
[ENA]
¢þ
>WENV181229912
OFEK01000116
[OFEK] activated sludge metagenome; Anaerobic digester
14691
14765
+
Lys
TTT
[ENA]
¢þ
>At1660
AE000666
Euryarchaeota
Methanothermobacter thermautotrophicus str. Delta H [AE000666]
954430
954503
+
Lys
TTT
[Ensembl]
¡û
>WENV170670883
LAHU01003268
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
6334
6261
-
Lys
TTT
[ENA]
¢þ
>WENV170675894
LDZQ01001192
[LDZQ] terrestrial metagenome; oil reservoir sample I2
3566
3641
+
Lys
TTT
[ENA]
¢þ
>WENV170676691
LDZS01001915
[LDZS] terrestrial metagenome; oil reservoir sample K3
4040
3964
-
Lys
TTT
[ENA]
¢þ
>WENV170677304
LDZT01004896
[LDZT] terrestrial metagenome; oil reservoir sample SB1
14170
14097
-
Lys
TTT
[ENA]
¢þ
>WENV170972473
MTKX01031377
[MTKX] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
526
453
-
Lys
TTT
[ENA]
¢þ
>W1910574920
JQJK01000008
Euryarchaeota
Methanobacterium veterum MK4 [JQJK]
599014
599087
+
Lys
TTT
[ENA]
¡û
>W1910574948
JQKN01000001
Euryarchaeota
Methanobacterium arcticum M2 [JQKN]
597348
597421
+
Lys
TTT
[ENA]
¡û
>W1910635146
LMVM01000023
Euryarchaeota
Methanobacterium bryantii M.o.H. [LMVM]
323193
323266
+
Lys
TTT
[ENA]
¡û
>W1910655444
LZPM01000006
Euryarchaeota
Methanobacterium sp. A39 [LZPM]
86709
86782
+
Lys
TTT
[ENA]
¡û
>W1911690458
QLOE01000003
Euryarchaeota
Methanothermobacter tenebrarum MCM B 1447 [QLOE]
20751
20678
-
Lys
TTT
[ENA]
¡û
>W1911722799
QREL01000001
Euryarchaeota
Methanothermobacter defluvii DSM 7466 [QREL]
287445
287371
-
Lys
TTT
[ENA]
¡û
>W1610612473
LGEU01000006
Euryarchaeota
Methanobacteriaceae archaeon 41_258 [LGEU]
3566
3641
+
Lys
TTT
[ENA]
¡û
>W1610613858
LGGL01000003
Euryarchaeota
Methanobacterium sp. 42_16 [LGGL]
14170
14097
-
Lys
TTT
[ENA]
¡û
>W1610990670
LWMT01000066
Euryarchaeota
Methanobrevibacter filiformis DSM 11501 [LWMT]
17649
17576
-
Lys
TTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK