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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.196313 (10 seq.)
>A171007128
FN869859
Thermoproteota
Thermoproteus tenax Kra 1 [FN869859]
730801
730877
+
Trp
CCA
-
¡û
>A178000348
CP003531
Thermoproteota
Thermogladius calderae 1633 [CP003531]
504567
504699
+
Trp
CCA
-
¡û
>A178000394
CP006867
Thermoproteota
Ignicoccus islandicus DSM 13165 [CP006867]
1040558
1040412
-
Trp
CCA
-
¡û
>A179000157
CP002051
Thermoproteota
Staphylothermus hellenicus DSM 12710 [CP002051]
1316642
1316479
-
Trp
CCA
-
¡û
>WENV181228590
OFEH01000333
[OFEH] hypersaline lake metagenome; Grendel Spring, Yellowstone National Park, Wyoming, USA
6015
5939
-
Trp
CCA
[ENA]
¢þ
>WENV181406565
OGCG01000509
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
14903
14827
-
Trp
CCA
[ENA]
¢þ
>At0397
CP000575
Thermoproteota
Staphylothermus marinus F1 [CP000575]
1065864
1066040
+
Trp
CCA
[Ensembl]
¡û
>At2223
CP000816
Thermoproteota
Ignicoccus hospitalis KIN4/I [CP000816]
1229145
1228998
-
Trp
CCA
[Ensembl]
¡û
>ENV09004082
ADKH01000045
Hot springs metagenome ctg_1106445186506
702
778
+
Trp
CCA
[ENA]
¡û
>ENV09004240
ADKL01000352
Hot springs metagenome ctg_1106426165452
1078
1002
-
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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