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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.196551 (5 seq.)
>WENV181717037
OGPS01093133
[OGPS] human gut metagenome; faeces
126
202
+
Asn
GTT
[ENA]
¢þ
>WENV182524671
OIWT01000429
[OIWT] human gut metagenome; faeces
57517
57593
+
Asn
GTT
[ENA]
¢þ
>WENV182528492
OIWU01004026
[OIWU] human gut metagenome; faeces
3502
3578
+
Asn
GTT
[ENA]
¢þ
>WENV183044981
OLGE01004122
[OLGE] human gut metagenome; faeces
3512
3588
+
Asn
GTT
[ENA]
¢þ
>WENV183641033
OQVL01017626
[OQVL] human gut metagenome; human gut
1122
1198
+
Asn
GTT
[ENA]
¢þ
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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