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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.196701 (24 seq.)
>W1711188842
LWQU01000156
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
7973
7897
-
Pro
TGG
[ENA]
¡û
>W1711505339
MKVK01000030
Alphaproteobacteria
Magnetospirillum sp. 64-120 [MKVK]
54296
54220
-
Pro
TGG
[ENA]
¡û
>C171041993
CP015848
Alphaproteobacteria
Magnetospirillum sp. ME-1 [CP015848]
531766
531690
-
Pro
TGG
-
¡û
>C013734
AP007255
Alphaproteobacteria
Magnetospirillum magneticum AMB-1 [AP007255]
960223
960299
+
Pro
TGG
[Ensembl]
¡û
>WENV180266068
OBEQ011717729
[OBEQ] groundwater metagenome; groundwater
1952
2028
+
Pro
TGG
[ENA]
¢þ
>WENV180321071
OBKQ01102068
[OBKQ] soil metagenome; Clay
281
205
-
Pro
TGG
[ENA]
¢þ
>WENV180343434
OBLK01016208
[OBLK] soil metagenome; Clay
417
493
+
Pro
TGG
[ENA]
¢þ
>WENV180353599
OBLQ010900633
[OBLQ] soil metagenome; soil
155
79
-
Pro
TGG
[ENA]
¢þ
>WENV180584568
OCOJ01057526
[OCOJ] soil metagenome; soil
1180
1256
+
Pro
TGG
[ENA]
¢þ
>WENV181296507
OFHJ01047265
[OFHJ] soil metagenome; Clay
415
339
-
Pro
TGG
[ENA]
¢þ
>WENV183681407
ORMF010301777
[ORMF] groundwater metagenome; groundwater
27
103
+
Pro
TGG
[ENA]
¢þ
>WENV183686460
ORMF011005289
[ORMF] groundwater metagenome; groundwater
23957
24033
+
Pro
TGG
[ENA]
¢þ
>WENV183688304
ORMF011272131
[ORMF] groundwater metagenome; groundwater
186
262
+
Pro
TGG
[ENA]
¢þ
>WENV170003240
AGTN01271070
[AGTN] bioreactor metagenome; poplar biomass
5933
5857
-
Pro
TGG
[ENA]
¢þ
>WENV170711918
LNFM01008344
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1419
1495
+
Pro
TGG
[ENA]
¢þ
>WENV170961668
MLJW01000412
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
10318
10242
-
Pro
TGG
[ENA]
¢þ
>C181155092
CP027526
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 [CP027526]
2285649
2285573
-
Pro
TGG
-
¡û
>C181155142
CP027527
Alphaproteobacteria
Magnetospirillum gryphiswaldense R3/S1 [CP027527]
2285649
2285573
-
Pro
TGG
-
¡û
>W1910498965
FXXN01000022
Alphaproteobacteria
Magnetospirillum sp. 15-1 [FXXN]
82450
82374
-
Pro
TGG
[ENA]
¡û
>W1911497414
OCNJ01000020
Alphaproteobacteria
Caenispirillum bisanense USBA 140 [OCNJ]
1380
1304
-
Pro
TGG
[ENA]
¡û
>C151099596
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
2115399
2115323
-
Pro
TGG
[Ensembl]
¡û
>C151101068
HG794546
Alphaproteobacteria
Magnetospirillum gryphiswaldense MSR-1 v2 [HG794546]
2271564
2271488
-
Pro
TGG
[Ensembl]
¡û
>C161108390
LN997848
Alphaproteobacteria
Magnetospirillum sp. XM-1 [LN997848]
4653483
4653407
-
Pro
TGG
-
¡û
>W1610990961
LWQU01000156
Alphaproteobacteria
Magnetospirillum moscoviense [LWQU]
7973
7897
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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