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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.196766 (84 seq.)
>W131170999
ARFX01000025
Gammaproteobacteria
Algicola sagamiensis DSM 14643 [ARFX]
72378
72302
-
Asn
GTT
[ENA]
¡û
>C015862
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
3590980
3591056
+
Asn
GTT
[Ensembl]
¡û
>C015863
CP000388
Gammaproteobacteria
Paraglaciecola sp. T6c [CP000388]
3591151
3591227
+
Asn
GTT
[Ensembl]
¡û
>W141223714
BAEK01000038
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
53993
54069
+
Asn
GTT
[ENA]
¡û
>W141223715
BAEK01000038
Gammaproteobacteria
Paraglaciecola agarilytica NO2 [BAEK]
54150
54226
+
Asn
GTT
[ENA]
¡û
>W141223771
BAEM01000042
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
53933
54009
+
Asn
GTT
[ENA]
¡û
>W141223772
BAEM01000042
Gammaproteobacteria
Paraglaciecola chathamensis S18K6 [BAEM]
54090
54166
+
Asn
GTT
[ENA]
¡û
>W141223919
BAEP01000062
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
53840
53916
+
Asn
GTT
[ENA]
¡û
>W141223920
BAEP01000062
Gammaproteobacteria
Paraglaciecola mesophila KMM 241 [BAEP]
54010
54086
+
Asn
GTT
[ENA]
¡û
>W141224031
BAER01000133
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
34098
34022
-
Asn
GTT
[ENA]
¡û
>W141224032
BAER01000133
Gammaproteobacteria
Paraglaciecola polaris LMG 21857 [BAER]
33923
33847
-
Asn
GTT
[ENA]
¡û
>W141242082
CAHY01000009
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
170749
170825
+
Asn
GTT
[ENA]
¡û
>W141242083
CAHY01000009
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
170854
170930
+
Asn
GTT
[ENA]
¡û
>W141242084
CAHY01000009
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CAHY]
170959
171035
+
Asn
GTT
[ENA]
¡û
>WENV182541959
OJAV01000061
[OJAV] seawater metagenome; Sea water
69868
69792
-
Asn
GTT
[ENA]
¢þ
>WENV182541966
OJAV01000067
[OJAV] seawater metagenome; Sea water
19936
19860
-
Asn
GTT
[ENA]
¢þ
>WENV182542351
OJAY01000197
[OJAY] seawater metagenome; Sea water
4258
4334
+
Asn
GTT
[ENA]
¢þ
>WENV182542397
OJAY01000437
[OJAY] seawater metagenome; Sea water
1899
1975
+
Asn
GTT
[ENA]
¢þ
>WENV182543446
OJBB01000217
[OJBB] seawater metagenome; Sea water
20423
20347
-
Asn
GTT
[ENA]
¢þ
>WENV182544100
OJBE01000395
[OJBE] seawater metagenome; Sea water
7546
7470
-
Asn
GTT
[ENA]
¢þ
>WENV182546788
OJBP01003221
[OJBP] seawater metagenome; Sea water
135
211
+
Asn
GTT
[ENA]
¢þ
>WENV182548840
OJBX01000388
[OJBX] seawater metagenome; Sea water
19080
19004
-
Asn
GTT
[ENA]
¢þ
>WENV182550937
OJCB01002169
[OJCB] seawater metagenome; Sea water
5100
5024
-
Asn
GTT
[ENA]
¢þ
>WENV182552421
OJCK01000048
[OJCK] seawater metagenome; Sea water
61743
61819
+
Asn
GTT
[ENA]
¢þ
>WENV182553877
OJCR01045500
[OJCR] seawater metagenome; Sea water
160
84
-
Asn
GTT
[ENA]
¢þ
>WENV182554922
OJCY01000001
[OJCY] seawater metagenome; Sea water
57524
57600
+
Asn
GTT
[ENA]
¢þ
>WENV182555784
OJDD01000728
[OJDD] seawater metagenome; Sea water
6034
5958
-
Asn
GTT
[ENA]
¢þ
>WENV182556743
OJDH01000027
[OJDH] seawater metagenome; Sea water
91583
91507
-
Asn
GTT
[ENA]
¢þ
>WENV182556952
OJDI01000068
[OJDI] seawater metagenome; Sea water
51508
51432
-
Asn
GTT
[ENA]
¢þ
>WENV182566194
OJEJ01000665
[OJEJ] seawater metagenome; Sea water
8443
8519
+
Asn
GTT
[ENA]
¢þ
>WENV182566688
OJEM01000145
[OJEM] seawater metagenome; Sea water
3678
3602
-
Asn
GTT
[ENA]
¢þ
>WENV182567703
OJEP01000066
[OJEP] seawater metagenome; Sea water
77047
77123
+
Asn
GTT
[ENA]
¢þ
>WENV182568336
OJET01002225
[OJET] seawater metagenome; Sea water
222
146
-
Asn
GTT
[ENA]
¢þ
>WENV182571060
OJFG01000199
[OJFG] seawater metagenome; Sea water
25582
25506
-
Asn
GTT
[ENA]
¢þ
>WENV182572014
OJFL01000069
[OJFL] seawater metagenome; Sea water
19136
19060
-
Asn
GTT
[ENA]
¢þ
>WENV182575625
OJFV01000583
[OJFV] seawater metagenome; Sea water
3568
3644
+
Asn
GTT
[ENA]
¢þ
>WENV182576046
OJFX01001904
[OJFX] seawater metagenome; Sea water
3413
3489
+
Asn
GTT
[ENA]
¢þ
>WENV182576047
OJFX01001904
[OJFX] seawater metagenome; Sea water
3570
3646
+
Asn
GTT
[ENA]
¢þ
>WENV182578458
OJGO01000058
[OJGO] seawater metagenome; Sea water
19136
19060
-
Asn
GTT
[ENA]
¢þ
>WENV182579573
OJGS01025306
[OJGS] seawater metagenome; Sea water
743
819
+
Asn
GTT
[ENA]
¢þ
>WENV182580089
OJGU01003372
[OJGU] seawater metagenome; Sea water
1807
1883
+
Asn
GTT
[ENA]
¢þ
>WENV182580679
OJGW01007351
[OJGW] seawater metagenome; Sea water
172
96
-
Asn
GTT
[ENA]
¢þ
>WENV182581342
OJGX01003316
[OJGX] seawater metagenome; Sea water
1921
1997
+
Asn
GTT
[ENA]
¢þ
>WENV182584376
OJHG01000077
[OJHG] seawater metagenome; Sea water
53814
53890
+
Asn
GTT
[ENA]
¢þ
>WENV182584434
OJHG01000270
[OJHG] seawater metagenome; Sea water
29443
29519
+
Asn
GTT
[ENA]
¢þ
>WENV182585741
OJHI01003634
[OJHI] seawater metagenome; Sea water
792
716
-
Asn
GTT
[ENA]
¢þ
>WENV182586204
OJHJ01020505
[OJHJ] seawater metagenome; Sea water
136
60
-
Asn
GTT
[ENA]
¢þ
>WENV182586425
OJHK01000318
[OJHK] seawater metagenome; Sea water
943
867
-
Asn
GTT
[ENA]
¢þ
>WENV182591537
OJIO01000331
[OJIO] seawater metagenome; Sea water
33429
33505
+
Asn
GTT
[ENA]
¢þ
>WENV182592633
OJIR01006274
[OJIR] seawater metagenome; Sea water
158
82
-
Asn
GTT
[ENA]
¢þ
>WENV183054918
OLGU01023230
[OLGU] seawater metagenome; Sea water
213
289
+
Asn
GTT
[ENA]
¢þ
>WENV183055183
OLGX01000086
[OLGX] seawater metagenome; Sea water
35156
35232
+
Asn
GTT
[ENA]
¢þ
>WENV183057261
OLHL01000081
[OLHL] seawater metagenome; Sea water
41280
41356
+
Asn
GTT
[ENA]
¢þ
>WENV183057274
OLHL01000122
[OLHL] seawater metagenome; Sea water
10745
10821
+
Asn
GTT
[ENA]
¢þ
>WENV183059703
OLHV01000439
[OLHV] seawater metagenome; Sea water
6471
6547
+
Asn
GTT
[ENA]
¢þ
>WENV183061015
OLHY01027336
[OLHY] seawater metagenome; Sea water
737
813
+
Asn
GTT
[ENA]
¢þ
>WENV183062249
OLID01001031
[OLID] seawater metagenome; Sea water
3053
2977
-
Asn
GTT
[ENA]
¢þ
>WENV183522358
OMOM01008646
[OMOM] seawater metagenome; Sea water
218
142
-
Asn
GTT
[ENA]
¢þ
>WENV170025108
BCQL01219679
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
172
96
-
Asn
GTT
[ENA]
¢þ
>WENV170315160
CESO01075936
[CESO] marine metagenome genome assembly TARA_093_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
212
136
-
Asn
GTT
[ENA]
¢þ
>C191217684
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
1395017
1394941
-
Asn
GTT
-
¡û
>C191217685
LR136958
Gammaproteobacteria
Alteromonas sp. 76-1 [LR136958]
1394912
1394836
-
Asn
GTT
-
¡û
>W1911641196
PYHU01000005
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
181222
181298
+
Asn
GTT
[ENA]
¡û
>W1911641197
PYHU01000005
Gammaproteobacteria
Alteromonas sp. KS69 [PYHU]
181327
181403
+
Asn
GTT
[ENA]
¡û
>C11100847
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
2810447
2810523
+
Asn
GTT
[Ensembl]
¡û
>C11100848
CP002339
Gammaproteobacteria
Alteromonas naphthalenivorans SN2 [CP002339]
2810552
2810628
+
Asn
GTT
[Ensembl]
¡û
>C11109487
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
1578856
1578780
-
Asn
GTT
[Ensembl]
¡û
>C11109488
CP002526
Gammaproteobacteria
Glaciecola sp. 4H-3-7+YE-5 4H-3-7+YE-5 [CP002526]
1578699
1578623
-
Asn
GTT
[Ensembl]
¡û
>W1511348350
JRKG01000016
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
765981
765905
-
Asn
GTT
[ENA]
¡û
>W1511348351
JRKG01000016
Gammaproteobacteria
Pseudoalteromonas sp. PLSV [JRKG]
765811
765735
-
Asn
GTT
[ENA]
¡û
>W1511586730
LAZL01000017
Gammaproteobacteria
Catenovulum maritimum Q1 [LAZL]
21203
21127
-
Asn
GTT
[ENA]
¡û
>C161051405
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
2653724
2653800
+
Asn
GTT
[Ensembl]
¡û
>C161051406
CP013120
Gammaproteobacteria
Alteromonas stellipolaris LMG 21856 [CP013120]
2653829
2653905
+
Asn
GTT
[Ensembl]
¡û
>C161062060
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
2128032
2128108
+
Asn
GTT
-
¡û
>C161062061
CP013926
Gammaproteobacteria
Alteromonas stellipolaris LMG 21861 [CP013926]
2128137
2128213
+
Asn
GTT
-
¡û
>C161062233
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
2171590
2171666
+
Asn
GTT
-
¡û
>C161062234
CP013932
Gammaproteobacteria
Alteromonas sp. Mac1 [CP013932]
2171695
2171771
+
Asn
GTT
-
¡û
>C161062282
CP013933
Gammaproteobacteria
Alteromonas sp. Mac2 [CP013933]
2147516
2147592
+
Asn
GTT
-
¡û
>C161071049
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
2183866
2183942
+
Asn
GTT
-
¡û
>C161071050
CP014322
Gammaproteobacteria
Alteromonas stellipolaris R10SW13 [CP014322]
2183971
2184047
+
Asn
GTT
-
¡û
>C161086257
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
4426939
4427015
+
Asn
GTT
-
¡û
>C161086258
CP015345
Gammaproteobacteria
Alteromonas stellipolaris PQQ-42 [CP015345]
4427044
4427120
+
Asn
GTT
-
¡û
>C161086330
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
3744517
3744441
-
Asn
GTT
-
¡û
>C161086331
CP015346
Gammaproteobacteria
Alteromonas stellipolaris PQQ-44 [CP015346]
3744412
3744336
-
Asn
GTT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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