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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.196873 (32 seq.)
>W1711027057
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76400
76324
-
Met
CAT
[ENA]
¡û
>W1711027061
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75970
75894
-
Met
CAT
[ENA]
¡û
>W1712080445
NGZL01000016
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
76
1
-
Met
CAT
[ENA]
¡û
>W1712080446
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
62331
62255
-
Met
CAT
[ENA]
¡û
>W1712080449
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
61990
61914
-
Met
CAT
[ENA]
¡û
>C020918
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
939527
939603
+
Met
CAT
[Ensembl]
¡û
>C021945
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
843284
843360
+
Met
CAT
[Ensembl]
¡û
>C022923
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1229974
1230050
+
Met
CAT
[Ensembl]
¡û
>C023286
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
3312735
3312659
-
Met
CAT
[Ensembl]
¡û
>W08005708
ABIC01000080
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
4259
4335
+
Met
CAT
[ENA]
¡û
>WENV170022233
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2078
2154
+
Met
CAT
[ENA]
¢þ
>WENV170022237
BCQK01002501
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2510
2586
+
Met
CAT
[ENA]
¢þ
>C181075004
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3108669
3108745
+
Met
CAT
-
¡û
>C181075008
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3109160
3109236
+
Met
CAT
-
¡û
>C191117228
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4091234
4091158
-
Met
CAT
-
¡û
>C191117232
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
4090804
4090728
-
Met
CAT
-
¡û
>C191148760
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1429391
1429315
-
Met
CAT
-
¡û
>C191148764
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1428892
1428816
-
Met
CAT
-
¡û
>C191173242
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1224874
1224798
-
Met
CAT
-
¡û
>C191173246
CP039928
Gammaproteobacteria
Shewanella sp. MEBiC00475 [CP039928]
1224444
1224368
-
Met
CAT
-
¡û
>C191185831
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
907169
907245
+
Met
CAT
-
¡û
>C191185835
CP041036
Gammaproteobacteria
Shewanella polaris SM1901 [CP041036]
907599
907675
+
Met
CAT
-
¡û
>W09103091
AAIV01000005
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
210387
210311
-
Met
CAT
[ENA]
¡û
>W1810155308
PJAP01000734
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
728
652
-
Met
CAT
[ENA]
¡û
>W1810157816
PJCD01000044
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
27341
27417
+
Met
CAT
[ENA]
¡û
>W1810157857
PJCE01000001
Gammaproteobacteria
Shewanella sp. Actino-trap-3 [PJCE]
4224677
4224753
+
Met
CAT
[ENA]
¡û
>W1610072055
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
23595
23671
+
Met
CAT
[ENA]
¡û
>W1610072059
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
24049
24125
+
Met
CAT
[ENA]
¡û
>W1610875169
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
76400
76324
-
Met
CAT
[ENA]
¡û
>W1610875173
LRDC01000009
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
75970
75894
-
Met
CAT
[ENA]
¡û
>W1710069257
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
23595
23671
+
Met
CAT
[ENA]
¡û
>W1710069261
BCUO01000005
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
24049
24125
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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