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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.196875 (36 seq.)
>W1711173035
LWCO01000135
Deinococcota
Meiothermus taiwanensis [LWCO]
9941
10017
+
Trp
CCA
[ENA]
¡û
>W131167643
ARDL01000002
Deinococcota
Calidithermus timidus DSM 17022 [ARDL]
132660
132584
-
Trp
CCA
[ENA]
¡û
>W131230808
AUHY01000005
Deinococcota
Meiothermus rufus DSM 22234 [AUHY]
77623
77547
-
Trp
CCA
[ENA]
¡û
>W131237746
AUQW01000004
Deinococcota
Calidithermus chliarophilus DSM 9957 [AUQW]
7557
7481
-
Trp
CCA
[ENA]
¡û
>W131240941
BAOR01000002
Deinococcota
Meiothermus ruber H328 [BAOR]
132185
132261
+
Trp
CCA
[ENA]
¡û
>WENV180013132
FMSI01049041
[FMSI] soil metagenome; Soil
654
578
-
Trp
CCA
[ENA]
¡û
>WENV180014671
FQKF010088991
[FQKF] soil metagenome; Soil
10
86
+
Trp
CCA
[ENA]
¡û
>WENV180038211
FVAA012910379
[FVAA] soil metagenome; Soil
7
83
+
Trp
CCA
[ENA]
¡û
>WENV181409480
OGCI01000208
[OGCI] hot springs metagenome; Hot spring water
18003
18079
+
Trp
CCA
[ENA]
¡û
>WENV181409761
OGCI01000580
[OGCI] hot springs metagenome; Hot spring water
12730
12654
-
Trp
CCA
[ENA]
¡û
>W141169826
AXWR01000010
Deinococcota
Meiothermus taiwanensis DSM 14542 [AXWR]
29612
29688
+
Trp
CCA
[ENA]
¡û
>WENV170700895
LJSS01006493
[LJSS] hot springs metagenome; water from Lobios Hot Spring
236
312
+
Trp
CCA
[ENA]
¡û
>W09109430
ABUF01000004
Deinococcota
Meiothermus ruber DSM 1279 [ABUF]
181019
180943
-
Trp
CCA
[ENA]
¡û
>W09109440
ABUG01000002
Deinococcota
Allomeiothermus silvanus DSM 9946 [ABUG]
283849
283773
-
Trp
CCA
[ENA]
¡û
>C191018572
CP021130
Deinococcota
Meiothermus taiwanensis WR-220 [CP021130]
458945
459021
+
Trp
CCA
-
¡û
>W141557650
JHVI01000008
Deinococcota
Meiothermus cerbereus DSM 11376 [JHVI]
74578
74654
+
Trp
CCA
[ENA]
¡û
>W1911751910
QWKX01000045
Deinococcota
Meiothermus cateniformans JCM 15151 [QWKX]
19186
19110
-
Trp
CCA
[ENA]
¡û
>W1911752065
QWLA01000086
Deinococcota
Meiothermus roseus NBRC 110900 [QWLA]
10921
10845
-
Trp
CCA
[ENA]
¡û
>W1911752089
QWLB01000017
Deinococcota
Meiothermus granaticius NBRC 107808 AF-68 [QWLB]
42947
43023
+
Trp
CCA
[ENA]
¡û
>W1911766318
QXDL01000014
Deinococcota
Meiothermus terrae DSM 26712 [QXDL]
29443
29367
-
Trp
CCA
[ENA]
¡û
>W1911766321
QXDL01000027
Deinococcota
Meiothermus terrae DSM 26712 [QXDL]
12284
12208
-
Trp
CCA
[ENA]
¡û
>W1810679077
QKOB01000016
Deinococcota
Meiothermus sp. Pnk-1 [QKOB]
18814
18738
-
Trp
CCA
[ENA]
¡û
>W2010103164
BJXM01000017
Deinococcota
Meiothermus granaticius NBRC 107808 [BJXM]
39149
39073
-
Trp
CCA
[ENA]
¡û
>W2011319942
QWKX01000045
Deinococcota
Meiothermus cateniformans JCM 15151 [QWKX]
19186
19110
-
Trp
CCA
[ENA]
¡û
>W2011320097
QWLA01000086
Deinococcota
Meiothermus roseus NBRC 110900 [QWLA]
10921
10845
-
Trp
CCA
[ENA]
¡û
>W2011320121
QWLB01000017
Deinococcota
Meiothermus granaticius NBRC 107808 AF-68 [QWLB]
42947
43023
+
Trp
CCA
[ENA]
¡û
>W2011324761
QXDL01000014
Deinococcota
Meiothermus terrae DSM 26712 [QXDL]
29443
29367
-
Trp
CCA
[ENA]
¡û
>W2011324764
QXDL01000027
Deinococcota
Meiothermus terrae DSM 26712 [QXDL]
12284
12208
-
Trp
CCA
[ENA]
¡û
>W2011556536
SESJ01000024
Deinococcota
Meiothermus sp. PNK-Is4 [SESJ]
18725
18649
-
Trp
CCA
[ENA]
¡û
>W2011975740
VCKS01000357
Gammaproteobacteria
Salmonella sp. hn-f5 [VCKS]
118
194
+
Trp
CCA
[ENA]
¡û
>C10109535
CP001743
Deinococcota
Meiothermus ruber DSM 1279 [CP001743]
707120
707196
+
Trp
CCA
-
¡û
>C10109573
CP002042
Deinococcota
Allomeiothermus silvanus DSM 9946 [CP002042]
175766
175842
+
Trp
CCA
[Ensembl]
¡û
>W1511344778
JRGA01000001
Deinococcota
Meiothermus ruber TC-1 [JRGA]
643876
643800
-
Trp
CCA
[ENA]
¡û
>W1511508310
JXOP01000008
Deinococcota
Meiothermus taiwanensis A [JXOP]
29434
29510
+
Trp
CCA
[ENA]
¡û
>C161003448
CP005385
Deinococcota
Meiothermus ruber DSM 1279 [CP005385]
640144
640220
+
Trp
CCA
-
¡û
>W1610981640
LWCO01000135
Deinococcota
Meiothermus taiwanensis [LWCO]
9941
10017
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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