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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.196875 (60 seq.)
>W1711027074
LRDC01000014
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
90440
90516
+
Arg
TCT
[ENA]
¡û
>W1711174310
LWED01000018
Gammaproteobacteria
Shewanella baltica [LWED]
161548
161472
-
Arg
TCT
[ENA]
¡û
>W1711621573
MPDG02000001
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
623643
623719
+
Arg
TCT
[ENA]
¡û
>W1711624552
MPHK01000002
Gammaproteobacteria
Shewanella sp. UCD-KL21 [MPHK]
142474
142398
-
Arg
TCT
[ENA]
¡û
>C020991
CP000302
Gammaproteobacteria
Shewanella denitrificans OS217 [CP000302]
2977596
2977520
-
Arg
TCT
[Ensembl]
¡û
>C022017
CP000447
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [CP000447]
3107774
3107698
-
Arg
TCT
[Ensembl]
¡û
>C022574
CP000503
Gammaproteobacteria
Shewanella sp. W3-18-1 [CP000503]
2978228
2978152
-
Arg
TCT
[Ensembl]
¡û
>C022929
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1880184
1880260
+
Arg
TCT
[Ensembl]
¡û
>C023234
CP000681
Gammaproteobacteria
Shewanella putrefaciens [CP000681]
1698263
1698339
+
Arg
TCT
[Ensembl]
¡û
>w007684
AAIU01000029
Gammaproteobacteria
Shewanella denitrificans OS-217 [AAIU]
331
253
-
Arg
TCT
[ENA]
¡û
>C08008612
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
1928422
1928498
+
Arg
TCT
[Ensembl]
¡û
>W141227891
BALN01000011
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 [BALN]
1407
1483
+
Arg
TCT
[ENA]
¡û
>W141277705
JAEU01000007
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
618837
618761
-
Arg
TCT
[ENA]
¡û
>WENV170022145
BCQK01000876
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
2066
2142
+
Arg
TCT
[ENA]
¢þ
>WENV021232
AACY020564192
Marine microbial communities from Global Ocean Sampling (GOS)
2845
2923
+
Arg
TCT
[ENA]
>C181016808
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
2467220
2467296
+
Arg
TCT
-
¡û
>C181057590
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
1603627
1603551
-
Arg
TCT
-
¡û
>C181075048
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
5213199
5213123
-
Arg
TCT
-
¡û
>C181164570
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
5146
5070
-
Arg
TCT
-
¡û
>C181165454
CP028435
Gammaproteobacteria
Shewanella putrefaciens WS13 [CP028435]
982146
982070
-
Arg
TCT
-
¡û
>C181167878
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
1795447
1795523
+
Arg
TCT
-
¡û
>W141520046
JGVI01000039
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
50825
50901
+
Arg
TCT
[ENA]
¡û
>C191117196
CP034015
Gammaproteobacteria
Shewanella livingstonensis LMG 19866 [CP034015]
1886940
1887016
+
Arg
TCT
-
¡û
>C191206482
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3125432
3125356
-
Arg
TCT
-
¡û
>W09103148
AAIV01000038
Gammaproteobacteria
Shewanella frigidimarina NCIMB 400 [AAIV]
818
742
-
Arg
TCT
[ENA]
¡û
>W09104337
AALN01000140
Gammaproteobacteria
Shewanella sp. W3-18-1 [AALN]
1500
1424
-
Arg
TCT
[ENA]
¡û
>C09109205
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
3230238
3230162
-
Arg
TCT
[Ensembl]
¡û
>W1910676737
MCTV01000026
Gammaproteobacteria
Shewanella sp. 10N.286.52.C2 [MCTV]
82746
82670
-
Arg
TCT
[ENA]
¡û
>W1910676964
MCTY01000196
Gammaproteobacteria
Shewanella sp. 10N.286.52.B9 [MCTY]
82660
82584
-
Arg
TCT
[ENA]
¡û
>W1910679530
MCVG01000171
Gammaproteobacteria
Shewanella sp. 10N.286.48.B5 [MCVG]
14800
14876
+
Arg
TCT
[ENA]
¡û
>W1910679655
MCVI01000016
Gammaproteobacteria
Shewanella sp. 10N.286.48.A6 [MCVI]
128301
128377
+
Arg
TCT
[ENA]
¡û
>W1810073360
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
3209384
3209460
+
Arg
TCT
[ENA]
¡û
>W1810155293
PJAP01000015
Gammaproteobacteria
Shewanella sp. 11B5 [PJAP]
86
162
+
Arg
TCT
[ENA]
¡û
>W1810157804
PJCD01000041
Gammaproteobacteria
Shewanella sp. ALD9 [PJCD]
117703
117779
+
Arg
TCT
[ENA]
¡û
>W1810422961
PYSG01000002
Gammaproteobacteria
Shewanella morhuae CW7 [PYSG]
938013
938089
+
Arg
TCT
[ENA]
¡û
>W1810587743
QFLG01000026
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
1574
1650
+
Arg
TCT
[ENA]
¡û
>W1810721515
QNSC01000001
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
233457
233381
-
Arg
TCT
[ENA]
¡û
>W10119073
ADVH01000028
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
39855
39931
+
Arg
TCT
[ENA]
¡û
>W10126032
AECY01000002
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
543739
543815
+
Arg
TCT
[ENA]
¡û
>W10126394
AEDE01000003
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
624649
624725
+
Arg
TCT
[ENA]
¡û
>C11119432
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
3223748
3223672
-
Arg
TCT
[Ensembl]
¡û
>C11119473
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
1975289
1975365
+
Arg
TCT
[Ensembl]
¡û
>C11119572
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
1965289
1965365
+
Arg
TCT
[Ensembl]
¡û
>W1511403558
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
1311022
1310946
-
Arg
TCT
[ENA]
¡û
>C11121506
CP002457
Gammaproteobacteria
Shewanella putrefaciens [CP002457]
1701541
1701617
+
Arg
TCT
[Ensembl]
¡û
>W11125245
ADVH01000028
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
39855
39931
+
Arg
TCT
[ENA]
¡û
>W11133293
AECY01000002
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
543739
543815
+
Arg
TCT
[ENA]
¡û
>W11133655
AEDE01000003
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
624649
624725
+
Arg
TCT
[ENA]
¡û
>W11169888
AFOZ01000019
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
1537
1613
+
Arg
TCT
[ENA]
¡û
>W11178432
AGEX01000003
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
634651
634727
+
Arg
TCT
[ENA]
¡û
>W121103322
AKZL01000032
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
52189
52113
-
Arg
TCT
[ENA]
¡û
>W1610072053
BCUO01000003
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
81731
81655
-
Arg
TCT
[ENA]
¡û
>W1610460607
FKJK01000006
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
165790
165714
-
Arg
TCT
[ENA]
¡û
>W1610617824
LGYY01000020
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
58306
58230
-
Arg
TCT
[ENA]
¡û
>W1610875186
LRDC01000014
Gammaproteobacteria
Shewanella frigidimarina [LRDC]
90440
90516
+
Arg
TCT
[ENA]
¡û
>W1610982623
LWED01000018
Gammaproteobacteria
Shewanella baltica [LWED]
161548
161472
-
Arg
TCT
[ENA]
¡û
>W1710069255
BCUO01000003
Gammaproteobacteria
Shewanella putrefaciens JCM 20190 = NBRC 3908 [BCUO]
81731
81655
-
Arg
TCT
[ENA]
¡û
>W1710460171
FKJK01000006
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
165790
165714
-
Arg
TCT
[ENA]
¡û
>W1710597931
FTNN01000005
Gammaproteobacteria
Shewanella morhuae [FTNN]
106554
106630
+
Arg
TCT
[ENA]
¡û
>W1710743999
LGYY01000020
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
58306
58230
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK