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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.19688 (28 seq.)
>W1711229787
LXYS01000004
Alphaproteobacteria
Bartonella apis [LXYS]
200989
200899
-
Ser
GCT
[ENA]
¡û
>W1711229824
LXYT01000002
Alphaproteobacteria
Bartonella apis [LXYT]
161119
161029
-
Ser
GCT
[ENA]
¡û
>W1711229862
LXYU01000002
Alphaproteobacteria
Bartonella apis [LXYU]
174519
174429
-
Ser
GCT
[ENA]
¡û
>WENV011351
AACY020309430
Marine microbial communities from Global Ocean Sampling (GOS)
8808
8900
+
Ser
GCT
[ENA]
>C171040298
CP015625
Alphaproteobacteria
Bartonella choladocola BBC0122 [CP015625]
895286
895376
+
Ser
GCT
-
¡û
>C171041684
CP015820
Alphaproteobacteria
Bartonella apihabitans BBC0178 [CP015820]
887345
887435
+
Ser
GCT
-
¡û
>C171041730
CP015821
Alphaproteobacteria
Bartonella apihabitans BBC0244 [CP015821]
898309
898399
+
Ser
GCT
-
¡û
>C171074286
CP018171
Alphaproteobacteria
Aquibium oceanicum B7 [CP018171]
2058632
2058542
-
Ser
GCT
-
¡û
>WENV180589752
OCOS01012228
[OCOS] marine metagenome; Sterile flask
580
670
+
Ser
GCT
[ENA]
¢þ
>W141275600
JADC01000009
Alphaproteobacteria
Bartonella clarridgeiae ATCC 51734 [JADC]
357687
357777
+
Ser
GCT
[ENA]
¡û
>ENV08000189
ABLY01004374
viral fraction from Arctic Ocean
106
16
-
Ser
GCT
[ENA]
¡û
>WENV183746577
POYE01021425
[POYE] biofilm metagenome; steel pipe from biofilm reactor
338
248
-
Ser
GCT
[ENA]
¢þ
>C181029166
CP017940
Alphaproteobacteria
Phyllobacterium zundukense Tri-48; RCAM 03910 [CP017940]
2439754
2439664
-
Ser
GCT
-
¡û
>W141702385
JMLL01000010
Alphaproteobacteria
Phyllobacterium sp. UNC302MFCol5.2 [JMLL]
146949
146859
-
Ser
GCT
[ENA]
¡û
>W1910839913
MZMT01000053
Alphaproteobacteria
Phyllobacterium zundukense Tri-38 [MZMT]
37587
37497
-
Ser
GCT
[ENA]
¡û
>SRA1000205
SRR001036.354125
Marine Viruses from Arctic Ocean (SRP000129)
106
16
-
Ser
GCT
[SRA]
>W1911810739
QYZQ01000001
Alphaproteobacteria
Mesorhizobium sp. DCY119 [QYZQ]
3547159
3547249
+
Ser
GCT
[ENA]
¡û
>W1810090872
PGGO01000001
Alphaproteobacteria
Phyllobacterium brassicacearum STM 196 [PGGO]
11266
11176
-
Ser
GCT
[ENA]
¡û
>W1810346641
PVBT01000006
Alphaproteobacteria
Phyllobacterium myrsinacearum DSM 5892 [PVBT]
278714
278804
+
Ser
GCT
[ENA]
¡û
>W1810608842
QGTP01000015
Alphaproteobacteria
Phyllobacterium myrsinacearum IAM 13584 [QGTP]
92295
92205
-
Ser
GCT
[ENA]
¡û
>W1810692955
QLKY01000015
Alphaproteobacteria
Phyllobacterium myrsinacearum HAMBI_1992 [QLKY]
91383
91293
-
Ser
GCT
[ENA]
¡û
>C11102662
FN645454
Alphaproteobacteria
Bartonella clarridgeiae 73 [FN645454]
447072
447162
+
Ser
GCT
[Ensembl]
¡û
>W121023511
AHAM01000366
Alphaproteobacteria
Mesorhizobium alhagi CCNWXJ12-2 [AHAM]
474
564
+
Ser
GCT
[ENA]
¡û
>W121059279
AILY01000021
Alphaproteobacteria
Bartonella rattimassiliensis 15908 [AILY]
28701
28791
+
Ser
GCT
[ENA]
¡û
>W121059384
AIMB01000007
Alphaproteobacteria
Bartonella tamiae Th239 [AIMB]
414083
414173
+
Ser
GCT
[ENA]
¡û
>W1710565448
FORF01000010
Alphaproteobacteria
Aquamicrobium aerolatum DSM 21857 [FORF]
4399
4309
-
Ser
GCT
[ENA]
¡û
>W1710565651
FORJ01000001
Alphaproteobacteria
Phyllobacterium sp. CL33Tsu [FORJ]
191413
191323
-
Ser
GCT
[ENA]
¡û
>W1710578131
FPBI01000008
Alphaproteobacteria
Mesorhizobium sp. YR577 [FPBI]
240877
240787
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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