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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197061 (45 seq.)
>W1710853420
LLWQ01000201
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
873
797
-
Arg
CCT
[ENA]
¡û
>W1710889734
LNBC01000009
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
99182
99258
+
Arg
CCT
[ENA]
¡û
>W1710918102
LNWO01000010
Alphaproteobacteria
Tritonibacter mobilis [LNWO]
188764
188840
+
Arg
CCT
[ENA]
¡û
>W1711127334
LUQC01000078
Alphaproteobacteria
Rhodobacteraceae bacterium REDSEA-S34_B6 [LUQC]
8458
8534
+
Arg
CCT
[ENA]
¡û
>W131158921
AQUO01000001
Alphaproteobacteria
Paracoccus sp. N5 [AQUO]
528504
528428
-
Arg
CCT
[ENA]
¡û
>C016028
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 [CP000489, CP000490]
1982169
1982093
-
Arg
CCT
[Ensembl]
¡û
>WENV180285095
OBID01221326
[OBID] metagenome; sludge
253
177
-
Arg
CCT
[ENA]
¢þ
>W141216634
AZVA01000011
Alphaproteobacteria
Paracoccus sp. J55 [AZVA]
111906
111982
+
Arg
CCT
[ENA]
¡û
>W141277357
JAEN01000010
Alphaproteobacteria
Paracoccus sp. J39 [JAEN]
144742
144666
-
Arg
CCT
[ENA]
¡û
>WENV183748272
PPFU01024130
[PPFU] hypolithon metagenome; Antarctic Hypolithon
1081
1005
-
Arg
CCT
[ENA]
¢þ
>WENV170013180
ATLU01000196
[ATLU] bioreactor metagenome; continuous culture bioreactor inoculated with sediment procaryotes from the German
13448
13524
+
Arg
CCT
[ENA]
¢þ
>WENV170222226
CEQD01014041
[CEQD] marine metagenome genome assembly TARA_042_SRF_0.22-1.6 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
159
83
-
Arg
CCT
[ENA]
¢þ
>WENV170377093
CETU01129548
[CETU] marine metagenome genome assembly TARA_142_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
286
210
-
Arg
CCT
[ENA]
¢þ
>WENV170564860
CZPY01000009
[CZPY] metagenome; PAHs-polluted Soil
99182
99258
+
Arg
CCT
[ENA]
¢þ
>WENV170581996
FUFK010072088
[FUFK] metagenome; unknown
6247
6171
-
Arg
CCT
[ENA]
¢þ
>WENV170733970
LULK01000614
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
8458
8534
+
Arg
CCT
[ENA]
¢þ
>PL191000057
CP000489
Alphaproteobacteria
Paracoccus denitrificans PD1222 plasmid:phage/plasmid primase, P4 family (CP000489)
1982169
1982093
-
Arg
CCT
[Ensembl]
¡û
>C181099776
CP024422
Alphaproteobacteria
Paracoccus yeei TT13 [CP024422]
1835149
1835225
+
Arg
CCT
-
¡û
>C181117162
CP025430
Alphaproteobacteria
Paracoccus zhejiangensis J6 [CP025430]
132924
133000
+
Arg
CCT
-
¡û
>C181119690
CP025583
Alphaproteobacteria
Paracoccus jeotgali CBA4604 [CP025583]
938260
938184
-
Arg
CCT
-
¡û
>C181203391
LN832559
Alphaproteobacteria
Paracoccus aminovorans [LN832559]
835129
835205
+
Arg
CCT
-
¡û
>C191134394
CP035090
Alphaproteobacteria
Paracoccus denitrificans ATCC 19367 [CP035090, CP035091]
723459
723383
-
Arg
CCT
-
¡û
>W09103068
AAIT01000012
Alphaproteobacteria
Paracoccus denitrificans PD1222 [AAIT]
167710
167786
+
Arg
CCT
[ENA]
¡û
>W1911495116
OBMP01000004
Alphaproteobacteria
Rhodobacter sp. JA431 [OBMP]
325791
325867
+
Arg
CCT
[ENA]
¡û
>W1911810948
QZCG01000002
Alphaproteobacteria
Paracoccus onubensis 1011MAR3C25 [QZCG]
312906
312982
+
Arg
CCT
[ENA]
¡û
>W1810236003
PPGA01000028
Alphaproteobacteria
Paracoccus denitrificans ISTOD1 [PPGA]
37944
38020
+
Arg
CCT
[ENA]
¡û
>W1810486281
QAXT01000015
Alphaproteobacteria
Rhodobacter aestuarii JA296 [QAXT]
21065
20989
-
Arg
CCT
[ENA]
¡û
>W1810585341
QFCQ01000172
Alphaproteobacteria
Paracoccus thiocyanatus SST [QFCQ]
3217
3293
+
Arg
CCT
[ENA]
¡û
>W1810750750
QOZU01000086
Alphaproteobacteria
Paracoccus pantotrophus KS1 [QOZU]
13057
13133
+
Arg
CCT
[ENA]
¡û
>C11117050
CP002897
Alphaproteobacteria
Paracoccus denitrificans [CP002897]
2664114
2664038
-
Arg
CCT
[Ensembl]
¡û
>W121060011
AJFB01001345
Alphaproteobacteria
Paracoccus denitrificans SD1 [AJFB]
266
342
+
Arg
CCT
[ENA]
¡û
>W1610049838
BBFH01000366
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1005
1081
+
Arg
CCT
[ENA]
¡û
>W1610190095
FBYC01000004
Alphaproteobacteria
Roseibaca calidilacus HL-91 [FBYC]
567949
567873
-
Arg
CCT
[ENA]
¡û
>W1610716544
LLWQ01000201
Alphaproteobacteria
Paracoccus sp. MKU1 [LLWQ]
873
797
-
Arg
CCT
[ENA]
¡û
>W1610750112
LNBC01000009
Alphaproteobacteria
Paracoccus aminovorans [LNBC]
99182
99258
+
Arg
CCT
[ENA]
¡û
>W1610938448
LUQC01000078
Alphaproteobacteria
Rhodobacteraceae bacterium REDSEA-S34_B6 [LUQC]
8458
8534
+
Arg
CCT
[ENA]
¡û
>W1710046237
BBFH01000366
Alphaproteobacteria
Paracoccus denitrificans JCM 21484 [BBFH]
1005
1081
+
Arg
CCT
[ENA]
¡û
>W1710191711
FBYC01000004
Alphaproteobacteria
Roseibaca calidilacus HL-91 [FBYC]
567949
567873
-
Arg
CCT
[ENA]
¡û
>W1710518482
FNEA01000052
Alphaproteobacteria
Paracoccus denitrificans [FNEA]
17077
17153
+
Arg
CCT
[ENA]
¡û
>W1710529855
FNOI01000002
Alphaproteobacteria
Litoreibacter albidus [FNOI]
695960
696036
+
Arg
CCT
[ENA]
¡û
>W1710563588
FOPU01000020
Alphaproteobacteria
Paracoccus aminovorans [FOPU]
5952
5876
-
Arg
CCT
[ENA]
¡û
>W1710574703
FOYK01000052
Alphaproteobacteria
Paracoccus denitrificans [FOYK]
2450
2374
-
Arg
CCT
[ENA]
¡û
>W1710581755
FPKI01000005
Alphaproteobacteria
Paracoccus pantotrophus [FPKI]
38899
38823
-
Arg
CCT
[ENA]
¡û
>W1710596208
FTMK01000034
Alphaproteobacteria
Paracoccus thiocyanatus [FTMK]
9328
9252
-
Arg
CCT
[ENA]
¡û
>W1710598842
FTOG01000017
Alphaproteobacteria
Rhodobacter aestuarii [FTOG]
19213
19289
+
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK