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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197150 (33 seq.)
>C025631
AE000512
Thermotogota
Thermotoga maritima MSB8 [AE000512]
190568
190644
+
Ile
GAT
-
¡û
>C025800
CP000702
Thermotogota
Thermotoga petrophila RKU-1 [CP000702]
753639
753563
-
Ile
GAT
[Ensembl]
¡û
>W141082662
AUNF01000052
Thermotogota
Thermotoga sp. A7A [AUNF]
475
551
+
Ile
GAT
[ENA]
¡û
>WENV181408834
OGCH01016376
[OGCH] hot springs metagenome; hot springs
271
347
+
Ile
GAT
[ENA]
¢þ
>C08010911
CP000969
Thermotogota
Thermotoga sp. RQ2 [CP000969]
788646
788573
-
Ile
GAT
[Ensembl]
¡û
>WENV170676757
LDZS01002159
[LDZS] terrestrial metagenome; oil reservoir sample K3
10223
10147
-
Ile
GAT
[ENA]
¢þ
>W09106557
AAWB01000011
Thermotogota
Thermotoga petrophila RKU-1 [AAWB]
39587
39663
+
Ile
GAT
[ENA]
¡û
>W09107411
ABIJ01000003
Thermotogota
Thermotoga sp. RQ2 [ABIJ]
50698
50622
-
Ile
GAT
[ENA]
¡û
>W09112242
ABXR01000030
Thermotogota
Marinitoga piezophila KA3 [ABXR]
51801
51725
-
Ile
GAT
[ENA]
¡û
>C141011542
CP007013
Thermotogota
Thermotoga maritima MSB8 [CP007013]
755052
754976
-
Ile
GAT
-
¡û
>W1910635437
LNDD01000001
Thermotogota
Thermotoga sp. SG1 [LNDD]
269250
269174
-
Ile
GAT
[ENA]
¡û
>W1910635514
LNDE01000003
Thermotogota
Thermotoga sp. KOL6 [LNDE]
142383
142459
+
Ile
GAT
[ENA]
¡û
>C151004287
CP003408
Thermotogota
Thermotoga sp. 2812B [CP003408]
793413
793337
-
Ile
GAT
[Ensembl]
¡û
>C151004333
CP003409
Thermotogota
Thermotoga sp. Cell2 [CP003409]
738765
738689
-
Ile
GAT
[Ensembl]
¡û
>C151074591
CP010967
Thermotogota
Thermotoga maritima Tma200 [CP010967]
190570
190646
+
Ile
GAT
[Ensembl]
¡û
>C151076945
CP011107
Thermotogota
Thermotoga maritima MSB8 [CP011107]
190570
190646
+
Ile
GAT
[Ensembl]
¡û
>C151076991
CP011108
Thermotogota
Thermotoga maritima Tma100 [CP011108]
190570
190646
+
Ile
GAT
[Ensembl]
¡û
>W10105814
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
187028
187104
+
Ile
GAT
[ENA]
¡û
>C10113486
CP001839
Thermotogota
Thermotoga petrophila RKU-10 [CP001839]
841205
841281
+
Ile
GAT
[Ensembl]
¡û
>W11108134
ACXW01000001
Thermotogota
Thermotoga petrophila RKU-10 [ACXW]
187028
187104
+
Ile
GAT
[ENA]
¡û
>W11180812
AGIJ01000003
Thermotogota
Thermotoga maritima MSB8 [AGIJ]
187387
187463
+
Ile
GAT
[ENA]
¡û
>W121062181
AJII01000007
Thermotogota
Thermotoga sp. EMP [AJII]
221215
221139
-
Ile
GAT
[ENA]
¡û
>C131012481
CP004077
Thermotogota
Thermotoga maritima MSB8 [CP004077]
190570
190646
+
Ile
GAT
-
¡û
>W1610540357
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
183093
183017
-
Ile
GAT
[ENA]
¡û
>W1610540370
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
110022
109946
-
Ile
GAT
[ENA]
¡û
>W1610540449
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
171366
171290
-
Ile
GAT
[ENA]
¡û
>W1610540461
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
72539
72615
+
Ile
GAT
[ENA]
¡û
>W1610613147
LGFM01000028
Thermotogota
Thermotoga sp. 47_83 [LGFM]
10223
10147
-
Ile
GAT
[ENA]
¡û
>W1710643378
JSFG01000015
Thermotogota
Thermotoga sp. TBGT1765 [JSFG]
183093
183017
-
Ile
GAT
[ENA]
¡û
>W1710643391
JSFH01000004
Thermotogota
Thermotoga sp. Mc24 [JSFH]
110022
109946
-
Ile
GAT
[ENA]
¡û
>W1710643470
JSFI01000014
Thermotogota
Thermotoga sp. TBGT1766 [JSFI]
171366
171290
-
Ile
GAT
[ENA]
¡û
>W1710643482
JSFJ01000009
Thermotogota
Thermotoga sp. Xyl54 [JSFJ]
72539
72615
+
Ile
GAT
[ENA]
¡û
>W1710734354
LGFM01000028
Thermotogota
Thermotoga sp. 47_83 [LGFM]
10223
10147
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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