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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197386 (7 seq.)
>W1711510296
MLAV01000024
Bacteroidota
Chitinophaga sp. CB10 [MLAV]
10391
10467
+
His
GTG
[ENA]
¡û
>WENV181401843
OFTX01010112
[OFTX] sludge metagenome; sludge
263
189
-
His
GTG
[ENA]
¢þ
>WENV181402545
OFTY01003779
[OFTY] sludge metagenome; sludge
289
363
+
His
GTG
[ENA]
¢þ
>C10103752
CP001699
Bacteroidota
Chitinophaga pinensis DSM 2588 [CP001699]
7472813
7472739
-
His
GTG
[Ensembl]
¡û
>W1710591019
FRBL01000004
Bacteroidota
Chitinophaga jiangningensis [FRBL]
294892
294968
+
His
GTG
[ENA]
¡û
>W1710591020
FRBL01000004
Bacteroidota
Chitinophaga jiangningensis [FRBL]
295034
295110
+
His
GTG
[ENA]
¡û
>W1710594119
FSRA01000001
Bacteroidota
Chitinophaga niabensis [FSRA]
604654
604579
-
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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