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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197906 (82 seq.)
>W1711092527
LTEE01000042
Actinomycetota
Corynebacterium sp. HMSC076C10 [LTEE]
26446
26522
+
Pro
TGG
[ENA]
¡û
>W1711093852
LTFJ01000012
Actinomycetota
Corynebacterium sp. HMSC064E08 [LTFJ]
12241
12165
-
Pro
TGG
[ENA]
¡û
>W1711096268
LTHP01000080
Actinomycetota
Corynebacterium sp. HMSC077C02 [LTHP]
5815
5888
+
Pro
TGG
[ENA]
¡û
>W1711096337
LTHQ01000043
Actinomycetota
Corynebacterium sp. HMSC063G05 [LTHQ]
12301
12225
-
Pro
TGG
[ENA]
¡û
>W1711097560
LTIU01000036
Actinomycetota
Corynebacterium sp. HMSC064H12 [LTIU]
17698
17774
+
Pro
TGG
[ENA]
¡û
>W1711098018
LTJF01000007
Actinomycetota
Corynebacterium sp. HMSC063A05 [LTJF]
137316
137240
-
Pro
TGG
[ENA]
¡û
>W1711098583
LTJR01000032
Actinomycetota
Corynebacterium sp. HMSC074C11 [LTJR]
72264
72340
+
Pro
TGG
[ENA]
¡û
>W1711099049
LTKD01000024
Actinomycetota
Corynebacterium sp. HMSC077G07 [LTKD]
23124
23199
+
Pro
TGG
[ENA]
¡û
>W1711099330
LTKK01000005
Actinomycetota
Corynebacterium sp. HMSC055G02 [LTKK]
30753
30677
-
Pro
TGG
[ENA]
¡û
>W1711102295
LTNP01000035
Actinomycetota
Corynebacterium sp. HMSC075F02 [LTNP]
738
814
+
Pro
TGG
[ENA]
¡û
>W1711102313
LTNQ01000010
Actinomycetota
Corynebacterium sp. HMSC074C05 [LTNQ]
78811
78735
-
Pro
TGG
[ENA]
¡û
>W1711102386
LTNR01000056
Actinomycetota
Corynebacterium sp. HMSC074C03 [LTNR]
90482
90406
-
Pro
TGG
[ENA]
¡û
>W1711102415
LTNS01000009
Actinomycetota
Corynebacterium sp. HMSC073B01 [LTNS]
78370
78294
-
Pro
TGG
[ENA]
¡û
>W1711102501
LTNT01000048
Actinomycetota
Corynebacterium sp. HMSC072D01 [LTNT]
24069
24145
+
Pro
TGG
[ENA]
¡û
>W1711102516
LTNU01000017
Actinomycetota
Corynebacterium sp. HMSC072B09 [LTNU]
78107
78031
-
Pro
TGG
[ENA]
¡û
>W1711102562
LTNV01000018
Actinomycetota
Corynebacterium sp. HMSC061H03 [LTNV]
24421
24497
+
Pro
TGG
[ENA]
¡û
>W1711103301
LTOO01000032
Actinomycetota
Corynebacterium sp. HMSC073H12 [LTOO]
14526
14450
-
Pro
TGG
[ENA]
¡û
>W1711103430
LTOS01000009
Actinomycetota
Corynebacterium sp. HMSC072B08 [LTOS]
131614
131538
-
Pro
TGG
[ENA]
¡û
>W1711106989
LTSJ01000011
Actinomycetota
Corynebacterium sp. HMSC064E07 [LTSJ]
126805
126881
+
Pro
TGG
[ENA]
¡û
>W1711110081
LTVE01000051
Actinomycetota
Corynebacterium sp. HMSC070B05 [LTVE]
99511
99435
-
Pro
TGG
[ENA]
¡û
>W1711113443
LTYH01000020
Actinomycetota
Corynebacterium sp. HMSC064E10 [LTYH]
12321
12245
-
Pro
TGG
[ENA]
¡û
>W1711114844
LTZQ01000016
Actinomycetota
Corynebacterium sp. HMSC11H10 [LTZQ]
128162
128086
-
Pro
TGG
[ENA]
¡û
>W1711114958
LTZS01000057
Actinomycetota
Corynebacterium sp. HMSC14H10 [LTZS]
732
808
+
Pro
TGG
[ENA]
¡û
>W1711186832
LWON01000030
Actinomycetota
Corynebacterium sp. HMSC14B06 [LWON]
78421
78345
-
Pro
TGG
[ENA]
¡û
>W1711187902
LWPW01000081
Actinomycetota
Corynebacterium sp. HMSC074C04 [LWPW]
5342
5266
-
Pro
TGG
[ENA]
¡û
>W1711236482
LYDS01000519
Actinomycetota
Streptomyces acidiscabies [LYDS]
5375
5451
+
Pro
TGG
[ENA]
¡û
>W1711236556
LYDT01000718
Actinomycetota
Streptomyces acidiscabies [LYDT]
5414
5490
+
Pro
TGG
[ENA]
¡û
>W1711236693
LYDV01000509
Actinomycetota
Streptomyces acidiscabies [LYDV]
5390
5466
+
Pro
TGG
[ENA]
¡û
>W1711427608
MIFV01000013
Actinomycetota
Corynebacterium amycolatum [MIFV]
4473
4397
-
Pro
TGG
[ENA]
¡û
>W1711507491
MKXS01000010
Actinomycetota
Corynebacterium sp. S1S1 [MKXS]
36795
36871
+
Pro
TGG
[ENA]
¡û
>W1711621744
MPDM01000001
Actinomycetota
Boudabousia marimammalium [MPDM]
14324
14250
-
Pro
TGG
[ENA]
¡û
>W1711724022
MTPT01000033
Actinomycetota
Corynebacterium amycolatum [MTPT]
15244
15320
+
Pro
TGG
[ENA]
¡û
>W1711743785
MUFT01000072
Actinomycetota
Streptomyces acidiscabies [MUFT]
17223
17147
-
Pro
TGG
[ENA]
¡û
>W1711772061
MVGS01000014
Actinomycetota
Trueperella pyogenes [MVGS]
1972
2048
+
Pro
TGG
[ENA]
¡û
>W131000453
AGEM01000010
Actinomycetota
Corynebacterium sp. HFH0082 [AGEM]
200602
200678
+
Pro
TGG
[ENA]
¡û
>WENV180554210
OCJN01000006
[OCJN] human skin metagenome; Infant 1 DOL 23 skin
470486
470410
-
Pro
TGG
[ENA]
¢þ
>WENV181326324
OFLL01000106
[OFLL] metagenome; faeces
30862
30786
-
Pro
TGG
[ENA]
¢þ
>WENV182629097
OJKR01004424
[OJKR] metagenome; surface
1302
1226
-
Pro
TGG
[ENA]
¢þ
>WENV182636060
OJKZ01000183
[OJKZ] metagenome; surface
27447
27371
-
Pro
TGG
[ENA]
¢þ
>WENV182640336
OJLB01003727
[OJLB] metagenome; surface
528
604
+
Pro
TGG
[ENA]
¢þ
>WENV182643275
OJLU01000069
[OJLU] metagenome; surface
622
698
+
Pro
TGG
[ENA]
¢þ
>WENV182643518
OJLW01000007
[OJLW] metagenome; surface
622
698
+
Pro
TGG
[ENA]
¢þ
>WENV182644616
OJLY01000061
[OJLY] metagenome; surface
87204
87128
-
Pro
TGG
[ENA]
¢þ
>WENV182646339
OJMA01003492
[OJMA] metagenome; surface
622
698
+
Pro
TGG
[ENA]
¢þ
>WENV182671777
OJNM01002505
[OJNM] metagenome; surface
622
698
+
Pro
TGG
[ENA]
¢þ
>W141284192
JALQ01000045
Actinomycetota
Trueperella pyogenes MS249 [JALQ]
2788
2864
+
Pro
TGG
[ENA]
¡û
>WENV183705491
PDWI01001658
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
29478
29402
-
Pro
TGG
[ENA]
¢þ
>C181056526
CP022054
Actinomycetota
Corynebacterium jeikeium FDAARGOS_328 [CP022054]
21989
22065
+
Pro
TGG
-
¡û
>C181168799
CP028833
Actinomycetota
Trueperella pyogenes Arash114 [CP028833]
475229
475305
+
Pro
TGG
-
¡û
>C181171265
CP029001
Actinomycetota
Trueperella pyogenes TP4479 [CP029001]
90269
90345
+
Pro
TGG
-
¡û
>C181171492
CP029004
Actinomycetota
Trueperella pyogenes TP-2849 [CP029004]
508595
508671
+
Pro
TGG
-
¡û
>C191114726
CP033902
Actinomycetota
Trueperella pyogenes TP1 [CP033902]
394667
394591
-
Pro
TGG
-
¡û
>C191114749
CP033903
Actinomycetota
Trueperella pyogenes TP2 [CP033903]
1686142
1686066
-
Pro
TGG
-
¡û
>C191114786
CP033904
Actinomycetota
Trueperella pyogenes TP3 [CP033904]
1061998
1062074
+
Pro
TGG
-
¡û
>C191114834
CP033905
Actinomycetota
Trueperella pyogenes TP4 [CP033905]
2364978
2364902
-
Pro
TGG
-
¡û
>W09114659
ABZU01000015
Actinomycetota
Corynebacterium amycolatum SK46 [ABZU]
45102
45026
-
Pro
TGG
[ENA]
¡û
>W09121394
ACFG01000033
Actinomycetota
Gleimia coleocanis DSM 15436 [ACFG]
691
615
-
Pro
TGG
[ENA]
¡û
>W09121395
ACFG01000033
Actinomycetota
Gleimia coleocanis DSM 15436 [ACFG]
374
300
-
Pro
TGG
[ENA]
¡û
>W1910647410
LXWD01000016
Actinomycetota
Streptomyces sp. ST1020 [LXWD]
22580
22504
-
Pro
TGG
[ENA]
¡û
>W1911552880
PCGS01000063
Actinomycetota
Streptomyces acidiscabies ST105 [PCGS]
26913
26837
-
Pro
TGG
[ENA]
¡û
>W1810085243
PESV01000002
Actinomycetota
Trueperella pyogenes Bu5 [PESV]
46640
46564
-
Pro
TGG
[ENA]
¡û
>W1810187593
PKHS01000002
Actinomycetota
Corynebacterium amycolatum UMB0042 [PKHS]
441058
440982
-
Pro
TGG
[ENA]
¡û
>W1810187667
PKHT01000009
Actinomycetota
Corynebacterium amycolatum UMB0338 [PKHT]
849
925
+
Pro
TGG
[ENA]
¡û
>W1810484097
QASM01000005
Actinomycetota
Trueperella pyogenes SH01 [QASM]
5151
5075
-
Pro
TGG
[ENA]
¡û
>W1810586091
QFDR01000018
Actinomycetota
Streptomyces sp. V2 [QFDR]
81557
81481
-
Pro
TGG
[ENA]
¡û
>C151013232
CP006841
Actinomycetota
Corynebacterium lactis RW2-5 [CP006841]
819780
819856
+
Pro
TGG
-
¡û
>C151015772
CP007003
Actinomycetota
Trueperella pyogenes TP8 [CP007003]
1540411
1540487
+
Pro
TGG
[Ensembl]
¡û
>C151026352
CP007519
Actinomycetota
Trueperella pyogenes TP6375 [CP007519]
475290
475366
+
Pro
TGG
[Ensembl]
¡û
>C151039866
CP008913
Actinomycetota
Corynebacterium sp. ATCC 6931 [CP008913]
1918536
1918612
+
Pro
TGG
[Ensembl]
¡û
>C151096872
CP012649
Actinomycetota
Trueperella pyogenes 2012CQ-ZSH [CP012649]
2214785
2214861
+
Pro
TGG
-
¡û
>W1511309953
JPPY01000174
Actinomycetota
Streptomyces acidiscabies NCPPB 4445 [JPPY]
102985
102909
-
Pro
TGG
[ENA]
¡û
>W1511351098
JRMX01000015
Actinomycetota
Arcanobacterium sp. S3PF19 [JRMX]
158360
158284
-
Pro
TGG
[ENA]
¡û
>W1511442778
JUSD01000042
Actinomycetota
Corynebacterium sp. 805_CJEI 805_CJEI [JUSD]
69455
69531
+
Pro
TGG
[ENA]
¡û
>W1511457818
JVIP01000040
Actinomycetota
Corynebacterium sp. 401_CJEI 401_CJEI [JVIP]
30669
30593
-
Pro
TGG
[ENA]
¡û
>W1511463593
JVOW01000011
Actinomycetota
Corynebacterium sp. 239_CJEI 239_CJEI [JVOW]
25932
26008
+
Pro
TGG
[ENA]
¡û
>W1511469481
JVVM01000026
Actinomycetota
Corynebacterium vitaeruminis 1285_CVIT [JVVM]
142109
142033
-
Pro
TGG
[ENA]
¡û
>W1511476441
JWEP01000068
Actinomycetota
Corynebacterium urealyticum 1055_CURE [JWEP]
120512
120436
-
Pro
TGG
[ENA]
¡û
>W121023902
AHBF01000056
Actinomycetota
Streptomyces acidiscabies 84-104 [AHBF]
36710
36786
+
Pro
TGG
[ENA]
¡û
>W1610061180
BCMK01000040
Actinomycetota
Streptomyces acidiscabies [BCMK]
76493
76417
-
Pro
TGG
[ENA]
¡û
>W1610634565
LIRL01000674
Actinomycetota
Streptomyces niveiscabiei [LIRL]
2571
2495
-
Pro
TGG
[ENA]
¡û
>W1710058775
BCMK01000040
Actinomycetota
Streptomyces acidiscabies [BCMK]
76493
76417
-
Pro
TGG
[ENA]
¡û
>W1710768942
LIRL01000674
Actinomycetota
Streptomyces niveiscabiei [LIRL]
2571
2495
-
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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