This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197988 (19 seq.)
>W1710882121
LMTO01000007
Alphaproteobacteria
Candidatus Liberibacter asiaticus [LMTO]
10508
10432
-
Arg
ACG
[ENA]
¡û
>W1711719845
MTIM01000018
Alphaproteobacteria
Candidatus Liberibacter asiaticus [MTIM]
2849
2925
+
Arg
ACG
[ENA]
¡û
>WENV181375923
OFQZ01007586
[OFQZ] wastewater metagenome; Exp Tend NO 0WW
283
359
+
Arg
ACG
[ENA]
¢þ
>WENV181402396
OFTY01001072
[OFTY] sludge metagenome; sludge
6191
6115
-
Arg
ACG
[ENA]
¢þ
>WENV170004278
AGTN01626157
[AGTN] bioreactor metagenome; poplar biomass
92
16
-
Arg
ACG
[ENA]
¢þ
>WENV170561668
CZCA01019717
[CZCA] anaerobic digester metagenome; anaerobic digester
130
206
+
Arg
ACG
[ENA]
¢þ
>W141461609
JFGQ01000004
Alphaproteobacteria
Candidatus Liberibacter asiaticus [JFGQ]
174100
174176
+
Arg
ACG
[ENA]
¡û
>C181041725
CP019958
Alphaproteobacteria
Candidatus Liberibacter asiaticus JXGC [CP019958]
616031
616107
+
Arg
ACG
-
¡û
>W141699790
JMIL02000096
Alphaproteobacteria
Candidatus Liberibacter asiaticus [JMIL]
1179
1255
+
Arg
ACG
[ENA]
¡û
>W09107907
ABQW01000002
Alphaproteobacteria
Candidatus Liberibacter asiaticus asiaticus str. psy62 [ABQW]
114886
114962
+
Arg
ACG
[ENA]
¡û
>C09102637
CP001677
Alphaproteobacteria
Candidatus Liberibacter asiaticus str. psy62 [CP001677]
622242
622318
+
Arg
ACG
[Ensembl]
¡û
>W1911766450
QXDO01000001
Alphaproteobacteria
Candidatus Liberibacter asiaticus asiaticus YNJS7C [QXDO]
616021
616097
+
Arg
ACG
[ENA]
¡û
>C151002412
AP014595
Alphaproteobacteria
Candidatus Liberibacter asiaticus str. Ishi-1 [AP014595]
614373
614449
+
Arg
ACG
[Ensembl]
¡û
>W1511478188
JWHA01000001
Alphaproteobacteria
Candidatus Liberibacter asiaticus asiaticus FL17 [JWHA]
622326
622402
+
Arg
ACG
[ENA]
¡û
>C161028536
CP010804
Alphaproteobacteria
Candidatus Liberibacter asiaticus A4 [CP010804]
616050
616126
+
Arg
ACG
-
¡û
>C131011137
CP004005
Alphaproteobacteria
Candidatus Liberibacter asiaticus str. gxpsy [CP004005]
606849
606925
+
Arg
ACG
[Ensembl]
¡û
>W1610630569
LIIM01000002
Alphaproteobacteria
Candidatus Liberibacter asiaticus [LIIM]
177742
177818
+
Arg
ACG
[ENA]
¡û
>W1610744048
LMTO01000007
Alphaproteobacteria
Candidatus Liberibacter asiaticus [LMTO]
10508
10432
-
Arg
ACG
[ENA]
¡û
>W1710761708
LIIM01000002
Alphaproteobacteria
Candidatus Liberibacter asiaticus [LIIM]
177742
177818
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK