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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.197999 (7 seq.)
>W1711796045
MWQF01000002
Fibrobacterota
Fibrobacter sp. UWH3 [MWQF]
260670
260595
-
Arg
TCT
[ENA]
¡û
>W1711796088
MWQG01000001
Fibrobacterota
Fibrobacter sp. UWH1 [MWQG]
89437
89512
+
Arg
TCT
[ENA]
¡û
>W1810172613
PJMN01000001
Fibrobacterota
Fibrobacter sp. UWT1 [PJMN]
2807188
2807263
+
Arg
TCT
[ENA]
¡û
>W1810695922
QLSW01000009
Fibrobacterota
Fibrobacter sp. UWH8 [QLSW]
82072
82147
+
Arg
TCT
[ENA]
¡û
>W1710585762
FQWP01000004
Fibrobacterota
Fibrobacter sp. UWH9 [FQWP]
51480
51405
-
Arg
TCT
[ENA]
¡û
>W1710590320
FRAX01000003
Fibrobacterota
Fibrobacter sp. UWH6 [FRAX]
81454
81529
+
Arg
TCT
[ENA]
¡û
>W1710590498
FRBB01000002
Fibrobacterota
Fibrobacter sp. UWH5 [FRBB]
54445
54520
+
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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