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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.198128 (83 seq.)
>W1710988603
LPVJ01000012
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
1023
947
-
Asp
GTC
[ENA]
¡û
>W1710988618
LPVJ01000020
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
4089
4013
-
Asp
GTC
[ENA]
¡û
>W1710988632
LPVJ01000049
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
8858
8782
-
Asp
GTC
[ENA]
¡û
>W1711082799
LSUQ01000005
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
27460
27536
+
Asp
GTC
[ENA]
¡û
>W1711082815
LSUQ01000016
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
38635
38559
-
Asp
GTC
[ENA]
¡û
>W1711148392
LVKL01000013
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
27427
27503
+
Asp
GTC
[ENA]
¡û
>W1711148400
LVKL01000072
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
20268
20344
+
Asp
GTC
[ENA]
¡û
>W1711430574
MIJE01000001
Bacillota
Desulfuribacillus alkaliarsenatis [MIJE]
284856
284932
+
Asp
GTC
[ENA]
¡û
>W1711430609
MIJE01000011
Bacillota
Desulfuribacillus alkaliarsenatis [MIJE]
41260
41336
+
Asp
GTC
[ENA]
¡û
>W1711430622
MIJE01000036
Bacillota
Desulfuribacillus alkaliarsenatis [MIJE]
60353
60429
+
Asp
GTC
[ENA]
¡û
>W1711430650
MIJF01000004
Bacillota
Vulcanibacillus modesticaldus [MIJF]
32600
32676
+
Asp
GTC
[ENA]
¡û
>W1711430666
MIJF01000016
Bacillota
Vulcanibacillus modesticaldus [MIJF]
11472
11396
-
Asp
GTC
[ENA]
¡û
>W1711456482
MJAT01000003
Bacillota
Desulfuribacillus stibiiarsenatis MLFW-2 [MJAT]
45609
45685
+
Asp
GTC
[ENA]
¡û
>W1711456523
MJAT01000038
Bacillota
Desulfuribacillus stibiiarsenatis MLFW-2 [MJAT]
65046
64970
-
Asp
GTC
[ENA]
¡û
>W1711456536
MJAT01000040
Bacillota
Desulfuribacillus stibiiarsenatis MLFW-2 [MJAT]
121906
121982
+
Asp
GTC
[ENA]
¡û
>W1711795464
MWPS01000005
Bacillota
Ferroacidibacillus organovorans ferrooxidans [MWPS]
252847
252923
+
Asp
GTC
[ENA]
¡û
>W1711795507
MWPS01000046
Bacillota
Ferroacidibacillus organovorans ferrooxidans [MWPS]
114281
114205
-
Asp
GTC
[ENA]
¡û
>C171098289
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
657774
657850
+
Asp
GTC
-
¡û
>C171098320
CP019698
Bacillota
Desulforamulus ferrireducens GSS09 [CP019698]
2970323
2970399
+
Asp
GTC
-
¡û
>W131219091
ATYG01000019
Bacillota
Carboxydothermus ferrireducens DSM 11255 [ATYG]
46721
46797
+
Asp
GTC
[ENA]
¡û
>W131242968
CAOS01000008
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
246287
246211
-
Asp
GTC
[ENA]
¡û
>W131242974
CAOS01000009
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
95156
95232
+
Asp
GTC
[ENA]
¡û
>W131242982
CAOS01000009
Bacillota
Desulforamulus hydrothermalis Lam5 = DSM 18033 [CAOS]
98707
98783
+
Asp
GTC
[ENA]
¡û
>C005904
CP000141
Bacillota
Carboxydothermus hydrogenoformans Z-2901 [CP000141]
1456122
1456046
-
Asp
GTC
[Ensembl]
¡û
>C018182
AP009389
Bacillota
Pelotomaculum thermopropionicum SI [AP009389]
969369
969445
+
Asp
GTC
[Ensembl]
¡û
>W141085110
AURB01000028
Bacillota
Alicyclobacillus acidoterrestris ATCC 49025 [AURB]
3889
3813
-
Asp
GTC
[ENA]
¡û
>W141085185
AURB01000185
Bacillota
Alicyclobacillus acidoterrestris ATCC 49025 [AURB]
8211
8135
-
Asp
GTC
[ENA]
¡û
>WENV170684920
LFRM01064137
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
353
277
-
Asp
GTC
[ENA]
¢þ
>WENV170686179
LFRM01130041
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
4287
4363
+
Asp
GTC
[ENA]
¢þ
>WENV170688556
LFRM01250988
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
3541
3465
-
Asp
GTC
[ENA]
¢þ
>WENV170719877
LSQX01132275
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
24922
24846
-
Asp
GTC
[ENA]
¢þ
>C181124145
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
295680
295756
+
Asp
GTC
-
¡û
>C181124152
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
323789
323865
+
Asp
GTC
-
¡û
>C181124186
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
2376553
2376477
-
Asp
GTC
-
¡û
>C181124196
CP025943
Bacillota
Laceyella sacchari FBKL4.010 [CP025943]
2043995
2043919
-
Asp
GTC
-
¡û
>C191151673
CP036487
Bacillota
Thermoactinomyces vulgaris CDF [CP036487]
1408394
1408470
+
Asp
GTC
-
¡û
>C191151686
CP036487
Bacillota
Thermoactinomyces vulgaris CDF [CP036487]
1777254
1777330
+
Asp
GTC
-
¡û
>C191151720
CP036487
Bacillota
Thermoactinomyces vulgaris CDF [CP036487]
665622
665546
-
Asp
GTC
-
¡û
>W09126252
ACJM01000017
Bacillota
Dethiobacter alkaliphilus AHT 1 [ACJM]
33500
33424
-
Asp
GTC
[ENA]
¡û
>W1910004753
AWQQ01000042
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
17655
17731
+
Asp
GTC
[ENA]
¡û
>W1910004761
AWQQ01000042
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
20221
20297
+
Asp
GTC
[ENA]
¡û
>W1910004786
AWQQ01000080
Bacillota
Desulforamulus profundi Bs107 [AWQQ]
15158
15082
-
Asp
GTC
[ENA]
¡û
>W1911075496
NMUQ01000001
Bacillota
Paenibacillus herberti R33 [NMUQ]
2773189
2773113
-
Asp
GTC
[ENA]
¡û
>W1911661993
QFGA01000001
Bacillota
Pelotomaculum schinkii HH [QFGA]
12519
12595
+
Asp
GTC
[ENA]
¡û
>W1911662088
QFGB01000087
Bacillota
Pelotomaculum sp. FP [QFGB]
2627
2551
-
Asp
GTC
[ENA]
¡û
>W1911771073
QXJM01000039
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
1230275
1230351
+
Asp
GTC
[ENA]
¡û
>W1911771096
QXJM01000040
Bacillota
Cohnella faecalis K2E09-144 [QXJM]
44636
44560
-
Asp
GTC
[ENA]
¡û
>W1810356764
PVNE01000005
Bacillota
Planifilum fimeticola DSM 44946 [PVNE]
96918
96842
-
Asp
GTC
[ENA]
¡û
>W1810356788
PVNE01000022
Bacillota
Planifilum fimeticola DSM 44946 [PVNE]
43288
43212
-
Asp
GTC
[ENA]
¡û
>W1510562175
CTDZ01000005
Bacillota
Numidum massiliense mt3 [CTDZ]
3147
3071
-
Asp
GTC
[ENA]
¡û
>W1510562193
CTDZ01000009
Bacillota
Numidum massiliense mt3 [CTDZ]
665271
665347
+
Asp
GTC
[ENA]
¡û
>W1511682168
LFJU01000011
Bacillota
Thermoactinomyces sp. CDF [LFJU]
204739
204663
-
Asp
GTC
[ENA]
¡û
>W1511682182
LFJU01000013
Bacillota
Thermoactinomyces sp. CDF [LFJU]
2459
2383
-
Asp
GTC
[ENA]
¡û
>W1610605727
LFSF01000035
Bacillota
Clostridiales bacterium DTU073 [LFSF]
3541
3465
-
Asp
GTC
[ENA]
¡û
>W1610615082
LGKI01000068
Bacillota
Thermoactinomyces vulgaris [LGKI]
117
193
+
Asp
GTC
[ENA]
¡û
>W1610615089
LGKI01000068
Bacillota
Thermoactinomyces vulgaris [LGKI]
28135
28211
+
Asp
GTC
[ENA]
¡û
>W1610615122
LGKI01000256
Bacillota
Thermoactinomyces vulgaris [LGKI]
360308
360384
+
Asp
GTC
[ENA]
¡û
>W1610615130
LGKI01000301
Bacillota
Thermoactinomyces vulgaris [LGKI]
1712
1636
-
Asp
GTC
[ENA]
¡û
>W1610843479
LPVJ01000012
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
1023
947
-
Asp
GTC
[ENA]
¡û
>W1610843494
LPVJ01000020
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
4089
4013
-
Asp
GTC
[ENA]
¡û
>W1610843508
LPVJ01000049
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LPVJ]
8858
8782
-
Asp
GTC
[ENA]
¡û
>W1610921552
LSUQ01000005
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
27460
27536
+
Asp
GTC
[ENA]
¡û
>W1610921568
LSUQ01000016
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LSUQ]
38635
38559
-
Asp
GTC
[ENA]
¡û
>W1610959123
LVKL01000013
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
27427
27503
+
Asp
GTC
[ENA]
¡û
>W1610959131
LVKL01000072
Bacillota
Ferroacidibacillus organovorans ferrooxidans [LVKL]
20268
20344
+
Asp
GTC
[ENA]
¡û
>W1710083595
BDJL01000019
Bacillota
Carboxydothermus islandicus [BDJL]
66201
66277
+
Asp
GTC
[ENA]
¡û
>W1710554115
FOIF01000006
Bacillota
Anaerobranca gottschalkii DSM 13577 [FOIF]
53894
53970
+
Asp
GTC
[ENA]
¡û
>W1710554124
FOIF01000010
Bacillota
Anaerobranca gottschalkii DSM 13577 [FOIF]
8624
8548
-
Asp
GTC
[ENA]
¡û
>W1710554152
FOIF01000048
Bacillota
Anaerobranca gottschalkii DSM 13577 [FOIF]
390
314
-
Asp
GTC
[ENA]
¡û
>W1710554157
FOIF01000064
Bacillota
Anaerobranca gottschalkii DSM 13577 [FOIF]
8995
8919
-
Asp
GTC
[ENA]
¡û
>W1710561759
FOOK01000002
Bacillota
Planifilum fulgidum [FOOK]
30905
30829
-
Asp
GTC
[ENA]
¡û
>W1710561777
FOOK01000013
Bacillota
Planifilum fulgidum [FOOK]
40025
39949
-
Asp
GTC
[ENA]
¡û
>W1710565987
FORR01000004
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
72821
72745
-
Asp
GTC
[ENA]
¡û
>W1710566018
FORR01000019
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
22081
22005
-
Asp
GTC
[ENA]
¡û
>W1710566028
FORR01000026
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
40218
40142
-
Asp
GTC
[ENA]
¡û
>W1710566033
FORR01000043
Bacillota
Thermoflavimicrobium dichotomicum [FORR]
19
95
+
Asp
GTC
[ENA]
¡û
>W1710581239
FPJZ01000003
Bacillota
Thermoactinomyces sp. DSM 45891 [FPJZ]
141384
141308
-
Asp
GTC
[ENA]
¡û
>W1710581256
FPJZ01000019
Bacillota
Thermoactinomyces sp. DSM 45891 [FPJZ]
17315
17239
-
Asp
GTC
[ENA]
¡û
>W1710727014
LFSF01000035
Bacillota
Clostridiales bacterium DTU073 [LFSF]
3541
3465
-
Asp
GTC
[ENA]
¡û
>W1710736328
LGKI01000068
Bacillota
Thermoactinomyces vulgaris [LGKI]
117
193
+
Asp
GTC
[ENA]
¡û
>W1710736335
LGKI01000068
Bacillota
Thermoactinomyces vulgaris [LGKI]
28135
28211
+
Asp
GTC
[ENA]
¡û
>W1710736368
LGKI01000256
Bacillota
Thermoactinomyces vulgaris [LGKI]
360308
360384
+
Asp
GTC
[ENA]
¡û
>W1710736376
LGKI01000301
Bacillota
Thermoactinomyces vulgaris [LGKI]
1712
1636
-
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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