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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.198281 (41 seq.)
>W1711116083
LUAS01000093
Betaproteobacteria
Oligella sp. HMSC09E12 [LUAS]
226
150
-
Ile
GAT
[ENA]
¡û
>W1711185171
LWNE01000081
Betaproteobacteria
Oligella sp. HMSC05A10 [LWNE]
1901
1977
+
Ile
GAT
[ENA]
¡û
>W141194181
AYSV01000032
Betaproteobacteria
Pelistega indica HM-7 [AYSV]
12259
12183
-
Ile
GAT
[ENA]
¡û
>WENV183739337
PJUE01008787
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
174
250
+
Ile
GAT
[ENA]
¢þ
>WENV170688188
LFRM01232641
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1184
1260
+
Ile
GAT
[ENA]
¢þ
>WENV170718972
LSQX01097105
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
456
532
+
Ile
GAT
[ENA]
¢þ
>WENV170719714
LSQX01124109
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1706
1630
-
Ile
GAT
[ENA]
¢þ
>WENV170723298
LSQX01263399
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
716
792
+
Ile
GAT
[ENA]
¢þ
>WENV170726387
LSQX01378261
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
1106
1030
-
Ile
GAT
[ENA]
¢þ
>WENV170726570
LSQX01386166
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
500
576
+
Ile
GAT
[ENA]
¢þ
>C181049069
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
268976
269052
+
Ile
GAT
-
¡û
>C181049072
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
395749
395825
+
Ile
GAT
-
¡û
>C181049076
CP021060
Betaproteobacteria
Taylorella equigenitalis 92-0972 [CP021060]
780926
781002
+
Ile
GAT
-
¡û
>C181049934
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
264025
264101
+
Ile
GAT
-
¡û
>C181049937
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
389341
389417
+
Ile
GAT
-
¡û
>C181049941
CP021199
Betaproteobacteria
Taylorella equigenitalis 89-0490 [CP021199]
766422
766498
+
Ile
GAT
-
¡û
>C181050008
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
262694
262770
+
Ile
GAT
-
¡û
>C181050011
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
388681
388757
+
Ile
GAT
-
¡û
>C181050015
CP021201
Betaproteobacteria
Taylorella equigenitalis 09-0932 [CP021201]
766992
767068
+
Ile
GAT
-
¡û
>C191208057
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
254520
254596
+
Ile
GAT
-
¡û
>C191208060
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
390369
390445
+
Ile
GAT
-
¡û
>C191208064
LR134346
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 NCTC11184 [LR134346]
768989
769065
+
Ile
GAT
-
¡û
>W1910225781
FMSW01000003
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
786
710
-
Ile
GAT
[ENA]
¡û
>W1910225785
FMSW01000007
Betaproteobacteria
Pelistega sp. MC2 [FMSW]
208047
208123
+
Ile
GAT
[ENA]
¡û
>W1911595551
PNGK01000016
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
45809
45885
+
Ile
GAT
[ENA]
¡û
>W1911595555
PNGK01000049
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
334
410
+
Ile
GAT
[ENA]
¡û
>W1911595557
PNGK01000050
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
331
407
+
Ile
GAT
[ENA]
¡û
>W1911595560
PNGK01000069
Betaproteobacteria
Oligella urethralis UMB0345 [PNGK]
214
290
+
Ile
GAT
[ENA]
¡û
>W1810701979
QMFX01000007
Betaproteobacteria
Taylorella equigenitalis 210217RC10635 [QMFX]
4105
4029
-
Ile
GAT
[ENA]
¡û
>C11122609
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
908579
908655
+
Ile
GAT
[Ensembl]
¡û
>C11122612
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
1040807
1040883
+
Ile
GAT
[Ensembl]
¡û
>C11122616
CP002456
Betaproteobacteria
Taylorella equigenitalis MCE9 [CP002456]
1419146
1419222
+
Ile
GAT
[Ensembl]
¡û
>W1511458936
JVJW01000075
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
5018
5094
+
Ile
GAT
[ENA]
¡û
>W1511458939
JVJW01000082
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
242
166
-
Ile
GAT
[ENA]
¡û
>W1511458941
JVJW01000083
Betaproteobacteria
Oligella urethralis 368_TASI [JVJW]
242
166
-
Ile
GAT
[ENA]
¡û
>C121004833
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
270782
270858
+
Ile
GAT
[Ensembl]
¡û
>C121004836
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
378945
379021
+
Ile
GAT
[Ensembl]
¡û
>C121004860
CP003059
Betaproteobacteria
Taylorella asinigenitalis MCE3 [CP003059]
963700
963624
-
Ile
GAT
[Ensembl]
¡û
>C121009920
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
284850
284926
+
Ile
GAT
[Ensembl]
¡û
>C121009923
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
420699
420775
+
Ile
GAT
[Ensembl]
¡û
>C121009927
CP003264
Betaproteobacteria
Taylorella equigenitalis ATCC 35865 [CP003264]
799310
799386
+
Ile
GAT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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