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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.198723 (56 seq.)
>W1711392857
MEOA01000003
Bacteroidota
Bacteroidetes bacterium GWE2_42_24 [MEOA]
32681
32757
+
Asp
GTC
[ENA]
¡û
>W1712050028
NFUW01000001
Bacteroidota
Chitinophagaceae bacterium IBVUCB1 [NFUW]
502141
502065
-
Asp
GTC
[ENA]
¡û
>W131145928
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
670282
670206
-
Asp
GTC
[ENA]
¡û
>WENV180099438
NMRC01004194
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
341
415
+
Asp
GTC
[ENA]
¢þ
>WENV180253760
OBEQ010574810
[OBEQ] groundwater metagenome; groundwater
48
124
+
Asp
GTC
[ENA]
¢þ
>WENV180264869
OBEQ011610376
[OBEQ] groundwater metagenome; groundwater
4875
4799
-
Asp
GTC
[ENA]
¢þ
>WENV180266158
OBEQ011726746
[OBEQ] groundwater metagenome; groundwater
4044
4120
+
Asp
GTC
[ENA]
¢þ
>WENV180269410
OBEQ012059017
[OBEQ] groundwater metagenome; groundwater
918
842
-
Asp
GTC
[ENA]
¢þ
>WENV180370736
OBOH01191821
[OBOH] marine metagenome; ENVO:00002010
136
212
+
Asp
GTC
[ENA]
¢þ
>WENV181169036
OEIV010000148
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
29146
29072
-
Asp
GTC
[ENA]
¢þ
>WENV181169393
OEIV010002170
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
5878
5952
+
Asp
GTC
[ENA]
¢þ
>WENV181836955
OGVJ01054050
[OGVJ] freshwater metagenome; freshwater
142
216
+
Asp
GTC
[ENA]
¢þ
>WENV181843358
OGVU01010365
[OGVU] freshwater metagenome; freshwater
1039
1113
+
Asp
GTC
[ENA]
¢þ
>WENV183663961
ORJL010330174
[ORJL] groundwater metagenome; groundwater
172
245
+
Asp
GTC
[ENA]
¢þ
>WENV170553344
CXWK01015696
[CXWK] wastewater metagenome; activated sludge
1925
1849
-
Asp
GTC
[ENA]
¢þ
>WENV170653754
JRYJ01076150
[JRYJ] activated sludge metagenome; activated biomass of a wastewater treatment plant treating hydrocarbon contaminated
6
82
+
Asp
GTC
[ENA]
¢þ
>W141727638
JNFF01000072
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
153286
153210
-
Asp
GTC
[ENA]
¡û
>W141727639
JNFF01000072
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
150094
150020
-
Asp
GTC
[ENA]
¡û
>W141727653
JNFF01000116
Bacteroidota
Pedobacter antarcticus 4BY [JNFF]
123614
123690
+
Asp
GTC
[ENA]
¡û
>C09108554
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
4974456
4974380
-
Asp
GTC
[Ensembl]
¡û
>W1911647408
QAJL01000004
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
532447
532373
-
Asp
GTC
[ENA]
¡û
>W1911647409
QAJL01000004
Bacteroidota
Pedobacter sp. KBW06 [QAJL]
532297
532223
-
Asp
GTC
[ENA]
¡û
>W1810076492
PEIM01000053
Bacteroidota
Pedobacter sp. IW39 [PEIM]
1960
2034
+
Asp
GTC
[ENA]
¡û
>W1810265786
PQVF01000001
Bacteroidota
Solitalea longa HR-AV [PQVF]
206717
206791
+
Asp
GTC
[ENA]
¡û
>W1810265787
PQVF01000001
Bacteroidota
Solitalea longa HR-AV [PQVF]
206855
206929
+
Asp
GTC
[ENA]
¡û
>W1810265788
PQVF01000001
Bacteroidota
Solitalea longa HR-AV [PQVF]
206994
207068
+
Asp
GTC
[ENA]
¡û
>W1810474660
QAIL01000422
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
24196
24122
-
Asp
GTC
[ENA]
¡û
>W1810474661
QAIL01000422
Bacteroidota
Pedobacter sp. HMWF019 [QAIL]
24046
23972
-
Asp
GTC
[ENA]
¡û
>W1810503910
QBKM01000002
Bacteroidota
Pedobacter sp. YR016 [QBKM]
23270
23196
-
Asp
GTC
[ENA]
¡û
>W1810503911
QBKM01000002
Bacteroidota
Pedobacter sp. YR016 [QBKM]
22783
22709
-
Asp
GTC
[ENA]
¡û
>W1810693901
QLLR01000020
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
12155
12081
-
Asp
GTC
[ENA]
¡û
>W1810693914
QLLR01000038
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
50350
50424
+
Asp
GTC
[ENA]
¡û
>W1810693918
QLLR01000053
Bacteroidota
Pedobacter cryoconitis DSM 14825 [QLLR]
13387
13461
+
Asp
GTC
[ENA]
¡û
>W1810704328
QMHQ01000001
Bacteroidota
Pedobacter namyangjuensis 5G38 [QMHQ]
633935
634009
+
Asp
GTC
[ENA]
¡û
>W1511509410
JXRA01000020
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
844
920
+
Asp
GTC
[ENA]
¡û
>W1511509411
JXRA01000020
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
3575
3651
+
Asp
GTC
[ENA]
¡û
>W1511509417
JXRA01000031
Bacteroidota
Pedobacter lusitanus NL19 [JXRA]
99354
99430
+
Asp
GTC
[ENA]
¡û
>C121011510
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
4678243
4678317
+
Asp
GTC
[Ensembl]
¡û
>C121011511
CP003349
Bacteroidota
Solitalea canadensis DSM 3403 [CP003349]
4678385
4678461
+
Asp
GTC
[Ensembl]
¡û
>C161073015
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
5128887
5128963
+
Asp
GTC
[Ensembl]
¡û
>C161073050
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
1107440
1107364
-
Asp
GTC
[Ensembl]
¡û
>C161073051
CP014504
Bacteroidota
Pedobacter cryoconitis PAMC 27485 [CP014504]
1102005
1101929
-
Asp
GTC
[Ensembl]
¡û
>W121017863
AGSC01000046
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
562417
562343
-
Asp
GTC
[ENA]
¡û
>W121017864
AGSC01000046
Bacteroidota
Solitalea canadensis DSM 3403 [AGSC]
562275
562199
-
Asp
GTC
[ENA]
¡û
>W1710519696
FNEX01000019
Bacteroidota
Pedobacter sp. ok626 [FNEX]
137486
137562
+
Asp
GTC
[ENA]
¡û
>W1710519697
FNEX01000019
Bacteroidota
Pedobacter sp. ok626 [FNEX]
137633
137709
+
Asp
GTC
[ENA]
¡û
>W1710522117
FNGY01000019
Bacteroidota
Pedobacter steynii [FNGY]
410
334
-
Asp
GTC
[ENA]
¡û
>W1710522118
FNGY01000019
Bacteroidota
Pedobacter steynii [FNGY]
259
183
-
Asp
GTC
[ENA]
¡û
>W1710522573
FNHH01000005
Bacteroidota
Daejeonella rubra ruber [FNHH]
37064
36988
-
Asp
GTC
[ENA]
¡û
>W1710533319
FNRA01000012
Bacteroidota
Pedobacter hartonius [FNRA]
50804
50880
+
Asp
GTC
[ENA]
¡û
>W1710533327
FNRA01000019
Bacteroidota
Pedobacter hartonius [FNRA]
28144
28218
+
Asp
GTC
[ENA]
¡û
>W1710583271
FQUQ01000009
Bacteroidota
Pedobacter caeni [FQUQ]
43626
43702
+
Asp
GTC
[ENA]
¡û
>W1710583272
FQUQ01000009
Bacteroidota
Pedobacter caeni [FQUQ]
43776
43852
+
Asp
GTC
[ENA]
¡û
>W1710602984
FUYR01000002
Bacteroidota
Daejeonella lutea luteus [FUYR]
938173
938247
+
Asp
GTC
[ENA]
¡û
>W1710606795
FWYB01000010
Bacteroidota
Pedobacter nyackensis [FWYB]
54058
54134
+
Asp
GTC
[ENA]
¡û
>W1710606796
FWYB01000010
Bacteroidota
Pedobacter nyackensis [FWYB]
54207
54281
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK