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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.19888 (48 seq.)
>W1711747525
MUKS01000004
Betaproteobacteria
Chromobacterium violaceum [MUKS]
7917
8007
+
Ser
GGA
[ENA]
¡û
>W1712081981
NHOO01000013
Betaproteobacteria
Chromobacterium violaceum [NHOO]
65042
64952
-
Ser
GGA
[ENA]
¡û
>C171089782
CP019169
Betaproteobacteria
Betaproteobacteria bacterium GR16-43 [CP019169]
4229456
4229366
-
Ser
GGA
-
¡û
>C007297
AE016825
Betaproteobacteria
Chromobacterium violaceum ATCC 12472 [AE016825]
1746261
1746351
+
Ser
GGA
[Ensembl]
¡û
>WENV180038457
FZPW01000012
[FZPW] metagenome; underground water
124277
124187
-
Ser
GGA
[ENA]
¢þ
>WENV180371060
OBOI01000188
[OBOI] sediment metagenome; sediment
25493
25583
+
Ser
GGA
[ENA]
¢þ
>WENV180647857
OCSI01014109
[OCSI] metagenome; diffuse fluid
11
101
+
Ser
GGA
[ENA]
¢þ
>WENV181144310
OEHO01002624
[OEHO] metagenome; unknown
793
883
+
Ser
GGA
[ENA]
¢þ
>WENV181184617
OEKM01000710
[OEKM] metagenome; 1998
9660
9750
+
Ser
GGA
[ENA]
¢þ
>WENV181293640
OFHG01012330
[OFHG] soil metagenome; Clay
634
544
-
Ser
GGA
[ENA]
¢þ
>WENV181297011
OFHK01004659
[OFHK] soil metagenome; Clay
2410
2320
-
Ser
GGA
[ENA]
¢þ
>W141169061
AXVM01000006
Betaproteobacteria
Comamonas badia DSM 17552 [AXVM]
299848
299938
+
Ser
GGA
[ENA]
¡û
>WENV181834774
OGVG01000665
[OGVG] freshwater metagenome; freshwater
1324
1414
+
Ser
GGA
[ENA]
¢þ
>WENV181839541
OGVO01002958
[OGVO] freshwater metagenome; freshwater
767
857
+
Ser
GGA
[ENA]
¢þ
>WENV181841840
OGVS01009847
[OGVS] freshwater metagenome; freshwater
733
821
+
Ser
GGA
[ENA]
¢þ
>WENV181855367
OGWL01011615
[OGWL] freshwater metagenome; freshwater
387
477
+
Ser
GGA
[ENA]
¢þ
>WENV183661798
ORJL010137405
[ORJL] groundwater metagenome; groundwater
221
131
-
Ser
GGA
[ENA]
¢þ
>WENV170573178
FLYJ01002673
[FLYJ] hot springs metagenome; Sediment
746
836
+
Ser
GGA
[ENA]
¢þ
>WENV170705981
LNAP01000768
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
35554
35464
-
Ser
GGA
[ENA]
¢þ
>WENV170705992
LNAP01000790
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
44094
44004
-
Ser
GGA
[ENA]
¢þ
>WENV170706226
LNAP01001756
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
91
1
-
Ser
GGA
[ENA]
¢þ
>WENV170706550
LNAP01004157
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
13506
13416
-
Ser
GGA
[ENA]
¢þ
>C181062393
CP022344
Betaproteobacteria
Chromobacterium vaccinii XC0014 [CP022344]
2682331
2682421
+
Ser
GGA
-
¡û
>C181062394
CP022344
Betaproteobacteria
Chromobacterium vaccinii XC0014 [CP022344]
2682474
2682564
+
Ser
GGA
-
¡û
>C181093186
CP024028
Betaproteobacteria
Chromobacterium violaceum CV1192 [CP024028]
1611282
1611372
+
Ser
GGA
-
¡û
>C181117135
CP025429
Betaproteobacteria
Chromobacterium sp. ATCC 53434 [CP025429]
3226695
3226605
-
Ser
GGA
-
¡û
>C181117136
CP025429
Betaproteobacteria
Chromobacterium sp. ATCC 53434 [CP025429]
3226552
3226462
-
Ser
GGA
-
¡û
>C181179643
CP029495
Betaproteobacteria
Chromobacterium phragmitis IIBBL 112-1 [CP029495]
3234461
3234551
+
Ser
GGA
-
¡û
>C181179644
CP029495
Betaproteobacteria
Chromobacterium phragmitis IIBBL 112-1 [CP029495]
3234603
3234693
+
Ser
GGA
-
¡û
>C181180317
CP029554
Betaproteobacteria
Chromobacterium phragmitis IIBBL 274-1 [CP029554]
4373273
4373363
+
Ser
GGA
-
¡û
>C181180318
CP029554
Betaproteobacteria
Chromobacterium phragmitis IIBBL 274-1 [CP029554]
4373415
4373505
+
Ser
GGA
-
¡û
>W1910128392
BHVV01000008
Betaproteobacteria
Sulfurisoma sediminicola BSN1 [BHVV]
210040
210130
+
Ser
GGA
[ENA]
¡û
>W1910699080
MEQV01000316
Betaproteobacteria
Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17 [MEQV]
3249
3339
+
Ser
GGA
[ENA]
¡û
>W1810266875
PQWB01000051
Betaproteobacteria
Chromobacterium alticapitis MWU14-2602 [PQWB]
38685
38595
-
Ser
GGA
[ENA]
¡û
>W1810266876
PQWB01000051
Betaproteobacteria
Chromobacterium alticapitis MWU14-2602 [PQWB]
38542
38452
-
Ser
GGA
[ENA]
¡û
>W1511484240
JWPW01000002
Betaproteobacteria
Chromobacterium violaceum GN5 [JWPW]
93927
94017
+
Ser
GGA
[ENA]
¡û
>W1511525800
JYGI01000006
Betaproteobacteria
Chromobacterium violaceum L_1B5_1 [JYGI]
143310
143220
-
Ser
GGA
[ENA]
¡û
>W1511544169
JZJJ01000041
Betaproteobacteria
Chromobacterium vaccinii MWU328 [JZJJ]
47212
47122
-
Ser
GGA
[ENA]
¡û
>W1511544170
JZJJ01000041
Betaproteobacteria
Chromobacterium vaccinii MWU328 [JZJJ]
47069
46979
-
Ser
GGA
[ENA]
¡û
>W1511544291
JZJL01000025
Betaproteobacteria
Chromobacterium vaccinii MWU205 [JZJL]
66438
66348
-
Ser
GGA
[ENA]
¡û
>W1511544292
JZJL01000025
Betaproteobacteria
Chromobacterium vaccinii MWU205 [JZJL]
66295
66205
-
Ser
GGA
[ENA]
¡û
>W1511596015
LBNQ01000022
Betaproteobacteria
Lampropedia cohaerens CT6 [LBNQ]
68246
68156
-
Ser
GGA
[ENA]
¡û
>W1511640865
LDUM01000004
Betaproteobacteria
Chromobacterium violaceum LK6 [LDUM]
249915
249825
-
Ser
GGA
[ENA]
¡û
>W1511641427
LDUT01000015
Betaproteobacteria
Chromobacterium violaceum LK15 [LDUT]
94340
94430
+
Ser
GGA
[ENA]
¡û
>W1511641542
LDUU01000018
Betaproteobacteria
Chromobacterium violaceum LK17 [LDUU]
52279
52189
-
Ser
GGA
[ENA]
¡û
>W1511641790
LDUX01000010
Betaproteobacteria
Chromobacterium violaceum LK30 [LDUX]
179731
179641
-
Ser
GGA
[ENA]
¡û
>W121108926
ALEE01000697
Betaproteobacteria
Melaminivora alkalimesophila CRZ1 [ALEE]
4154
4064
-
Ser
GGA
[ENA]
¡û
>W1710547375
FOCW01000001
Betaproteobacteria
Brachymonas denitrificans DSM 15123 [FOCW]
1108185
1108095
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK