This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199130 (24 seq.)
>W131181016
ARNO01000020
Alphaproteobacteria
Woodsholea maritima DSM 17123 [ARNO]
2175
2251
+
Ile
GAT
[ENA]
¡û
>W131181021
ARNO01000025
Alphaproteobacteria
Woodsholea maritima DSM 17123 [ARNO]
44809
44885
+
Ile
GAT
[ENA]
¡û
>C019104
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
194189
194265
+
Ile
GAT
[Ensembl]
¡û
>C019112
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
913057
913133
+
Ile
GAT
[Ensembl]
¡û
>C019135
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
3810513
3810437
-
Ile
GAT
[Ensembl]
¡û
>C019144
CP000230
Alphaproteobacteria
Rhodospirillum rubrum ATCC 11170 [CP000230]
2735465
2735389
-
Ile
GAT
[Ensembl]
¡û
>w001374
AAAG02000010
Alphaproteobacteria
Rhodospirillum rubrum [AAAG]
2394
2470
+
Ile
GAT
[ENA]
¡û
>w001334
AAAG02000001
Alphaproteobacteria
Rhodospirillum rubrum [AAAG]
1073572
1073499
-
Ile
GAT
[ENA]
¡û
>WENV181316292
OFJT01013829
[OFJT] marine metagenome; seawater
108
184
+
Ile
GAT
[ENA]
¢þ
>WENV183064979
OLII01006820
[OLII] seawater metagenome; Sea water
2477
2401
-
Ile
GAT
[ENA]
¢þ
>WENV183719604
PDWJ01017013
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
4471
4395
-
Ile
GAT
[ENA]
¢þ
>WENV170241812
CEQO01011322
[CEQO] marine metagenome genome assembly TARA_078_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
503
427
-
Ile
GAT
[ENA]
¢þ
>WENV170519744
CEWE01255732
[CEWE] marine metagenome genome assembly TARA_124_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
623
699
+
Ile
GAT
[ENA]
¢þ
>WENV170610412
FUWD011885659
[FUWD] metagenome; unknown
116
192
+
Ile
GAT
[ENA]
¢þ
>WENV170724318
LSQX01300773
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
2302
2228
-
Ile
GAT
[ENA]
¢þ
>WENV170890082
MDTD01004544
[MDTD] marine metagenome; seawater
41
117
+
Ile
GAT
[ENA]
¢þ
>WENV170932591
MDTG01205041
[MDTG] marine metagenome; seawater
2361
2285
-
Ile
GAT
[ENA]
¢þ
>WENV170960939
MKWU01066939
[MKWU] sponge metagenome;
1436
1360
-
Ile
GAT
[ENA]
¢þ
>C11118816
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
194189
194265
+
Ile
GAT
[Ensembl]
¡û
>C11118825
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
913057
913133
+
Ile
GAT
[Ensembl]
¡û
>C11118849
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
3810513
3810437
-
Ile
GAT
[Ensembl]
¡û
>C11118859
CP003046
Alphaproteobacteria
Rhodospirillum rubrum F11 [CP003046]
2735465
2735389
-
Ile
GAT
[Ensembl]
¡û
>WENV078213
AAFZ01008290
Fossil microbial community from Whale Fall (Santa Cruz Basin)
119
43
-
Ile
GAT
[ENA]
>W1710522550
FNHG01000020
Alphaproteobacteria
Maricaulis salignorans [FNHG]
2299
2375
+
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK