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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199370 (30 seq.)
>W1710876988
LMPS01000009
Bacteroidota
Dyadobacter sp. Leaf189 [LMPS]
71017
71093
+
Asn
GTT
[ENA]
¡û
>W1711115603
LUAH01000126
Bacteroidota
Sphingobacterium sp. HMSC13C05 [LUAH]
31990
32066
+
Asn
GTT
[ENA]
¡û
>W131221776
AUAS01000013
Bacteroidota
Dyadobacter alkalitolerans DSM 23607 [AUAS]
210913
210989
+
Asn
GTT
[ENA]
¡û
>C171037539
CP015317
Bacteroidota
Fibrella sp. ES10-3-2-2 [CP015317]
4057733
4057809
+
Asn
GTT
-
¡û
>C171118434
CP021381
Bacteroidota
Sphingobacterium sp. G1-14 [CP021381]
1858887
1858963
+
Asn
GTT
-
¡û
>W131145914
AQGK01000003
Bacteroidota
Pedobacter heparinus DSM 2366 [AQGK]
109691
109765
+
Asn
GTT
[ENA]
¡û
>WENV183726545
PJTO01000006
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
32297
32371
+
Asn
GTT
[ENA]
¢þ
>WENV183728626
PJTQ01000199
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
37272
37198
-
Asn
GTT
[ENA]
¢þ
>WENV183730641
PJTS01000242
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
31298
31224
-
Asn
GTT
[ENA]
¢þ
>WENV183735764
PJUB01001827
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
264
338
+
Asn
GTT
[ENA]
¢þ
>WENV183736537
PJUC01010364
[PJUC] soil metagenome; Soil enriched on filter paper
596
670
+
Asn
GTT
[ENA]
¢þ
>WENV183736984
PJUD01000175
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
15064
15138
+
Asn
GTT
[ENA]
¢þ
>WENV183738972
PJUE01000693
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
7659
7585
-
Asn
GTT
[ENA]
¢þ
>WENV183741000
PJUF01026296
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
565
491
-
Asn
GTT
[ENA]
¢þ
>WENV183741413
PJUG01000006
[PJUG] feces metagenome; Chicken feces (2) enriched on wood chips: beechwood xylan treatment
382418
382344
-
Asn
GTT
[ENA]
¢þ
>WENV183741929
PJUH01000010
[PJUH] feces metagenome; Chicken feces (2) enriched on wood chips: alkali lignin treatment
382418
382344
-
Asn
GTT
[ENA]
¢þ
>WENV183742561
PJUI01000016
[PJUI] feces metagenome; Chicken feces (2) enriched on wood chips
382418
382344
-
Asn
GTT
[ENA]
¢þ
>WENV183743022
PJUJ01000009
[PJUJ] feces metagenome; Chicken feces enriched on filter paper: beechwood xylan treatment
382418
382344
-
Asn
GTT
[ENA]
¢þ
>WENV183743832
PJUK01000008
[PJUK] feces metagenome; Chicken feces enriched on filter paper: alkali lignin treatment
382418
382344
-
Asn
GTT
[ENA]
¢þ
>W141731391
JNJB01000008
Bacteroidota
Dyadobacter crusticola DSM 16708 [JNJB]
40133
40209
+
Asn
GTT
[ENA]
¡û
>C09103956
CP001619
Bacteroidota
Dyadobacter fermentans DSM 18053 [CP001619]
4108780
4108706
-
Asn
GTT
[Ensembl]
¡û
>C09108552
CP001681
Bacteroidota
Pedobacter heparinus DSM 2366 [CP001681]
4413864
4413938
+
Asn
GTT
[Ensembl]
¡û
>W1810002525
BEYR01000001
Bacteroidota
Sphingobacterium sp. HMA12 [BEYR]
31784
31858
+
Asn
GTT
[ENA]
¡û
>W1810392826
PYAS01000005
Bacteroidota
Dyadobacter jiangsuensis DSM 29057 [PYAS]
824
750
-
Asn
GTT
[ENA]
¡û
>W1810531906
QCXX01000002
Bacteroidota
Sphingobacterium athyrii M46 [QCXX]
32735
32809
+
Asn
GTT
[ENA]
¡û
>C161104985
HE796683
Bacteroidota
Fibrella aestuarina BUZ 2 [HE796683]
5493430
5493356
-
Asn
GTT
[Ensembl]
¡û
>W1610739334
LMPS01000009
Bacteroidota
Dyadobacter sp. Leaf189 [LMPS]
71017
71093
+
Asn
GTT
[ENA]
¡û
>W1710540984
FNXY01000005
Bacteroidota
Dyadobacter koreensis [FNXY]
549385
549462
+
Asn
GTT
[ENA]
¡û
>W1710541613
FNYL01000010
Bacteroidota
Dyadobacter sp. SG02 [FNYL]
115779
115705
-
Asn
GTT
[ENA]
¡û
>W1710603412
FUZA01000010
Bacteroidota
Dyadobacter psychrophilus [FUZA]
114222
114146
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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