This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199551 (39 seq.)
>W1711126418
LUOO01000053
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
23879
23803
-
His
GTG
[ENA]
¡û
>W1711704495
MSPP01000001
Alphaproteobacteria
Marivivens niveibacter MCCC 1A06712 [MSPP]
466337
466413
+
His
GTG
[ENA]
¡û
>W1711798587
MWVJ01000016
Alphaproteobacteria
Pseudophaeobacter leonis [MWVJ]
40032
39956
-
His
GTG
[ENA]
¡û
>w023719
AAYC01000005
Alphaproteobacteria
Roseobacter sp. SK209-2-6 [AAYC]
20593
20515
-
His
GTG
[ENA]
¡û
>W141151607
AXBE01000004
Alphaproteobacteria
Leisingera aquimarina DSM 24565 [AXBE]
1149448
1149372
-
His
GTG
[ENA]
¡û
>WENV170016105
AZIJ01012708
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
108
32
-
His
GTG
[ENA]
¢þ
>WENV170727341
LULE01000002
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
1006891
1006815
-
His
GTG
[ENA]
¢þ
>WENV170739265
LULQ01000074
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
23879
23803
-
His
GTG
[ENA]
¢þ
>WENV170759386
LUMS01017284
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
662
738
+
His
GTG
[ENA]
¢þ
>W141464082
JFKE01000004
Alphaproteobacteria
Actibacterium mucosum KCTC 23349 [JFKE]
40984
40908
-
His
GTG
[ENA]
¡û
>C181008454
CP010588
Alphaproteobacteria
Phaeobacter gallaeciensis P11 [CP010588]
2608768
2608692
-
His
GTG
-
¡û
>C181049059
CP021047
Alphaproteobacteria
Phaeobacter gallaeciensis P128 [CP021047]
2514304
2514228
-
His
GTG
-
¡û
>C181054561
CP021913
Alphaproteobacteria
Sagittula sp. P11 [CP021913]
3363458
3363534
+
His
GTG
-
¡û
>C181060583
CP022196
Alphaproteobacteria
Celeribacter ethanolicus TSPH2 [CP022196]
3956304
3956380
+
His
GTG
-
¡û
>C191141141
CP035417
Alphaproteobacteria
Leisingera sp. NJS204 [CP035417]
2774187
2774111
-
His
GTG
-
¡û
>W09112097
ABXM01000007
Alphaproteobacteria
Ruegeria sp. R11 [ABXM]
164093
164017
-
His
GTG
[ENA]
¡û
>W141820547
JQMY01000001
Alphaproteobacteria
Oceanicola sp. MCTG156(1a) [JQMY]
1812327
1812403
+
His
GTG
[ENA]
¡û
>W1910442937
FWFQ01000008
Alphaproteobacteria
Pseudoruegeria aquimaris CECT 7680 [FWFQ]
86881
86957
+
His
GTG
[ENA]
¡û
>C141008382
CP006773
Alphaproteobacteria
Leisingera methylohalidivorans DSM 14336 DSM 14336; MB2 [CP006773]
2499978
2499902
-
His
GTG
[Ensembl]
¡û
>W1910499005
FXXP01000001
Alphaproteobacteria
Pelagimonas phthalicica CECT 8649 [FXXP]
1822650
1822726
+
His
GTG
[ENA]
¡û
>W1911237245
NSBU01000007
Alphaproteobacteria
Actibacterium pelagium JN33 [NSBU]
280096
280020
-
His
GTG
[ENA]
¡û
>W1911696517
QMEJ01000004
Alphaproteobacteria
Tropicimonas sp. IMCC34011 [QMEJ]
56588
56664
+
His
GTG
[ENA]
¡û
>W1810235328
PPFE01000002
Alphaproteobacteria
Roseovarius confluentis SAG6 [PPFE]
585765
585841
+
His
GTG
[ENA]
¡û
>W1810476811
QAOH01000008
Alphaproteobacteria
Celeribacter persicus DSM 100434 [QAOH]
83308
83384
+
His
GTG
[ENA]
¡û
>W1510650454
CVQZ01000028
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVQZ]
89746
89822
+
His
GTG
[ENA]
¡û
>W1510650758
CVRM01000003
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVRM]
89746
89822
+
His
GTG
[ENA]
¡û
>W1511583822
LAUK01000012
Alphaproteobacteria
Nautella sp. ECSMB14104 [LAUK]
4006
3930
-
His
GTG
[ENA]
¡û
>W1610016158
AOQA01000007
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
685464
685388
-
His
GTG
[ENA]
¡û
>W1610092855
CYSD01000012
Alphaproteobacteria
Tritonibacter multivorans [CYSD]
7398
7322
-
His
GTG
[ENA]
¡û
>W1610578334
LAXJ01000008
Alphaproteobacteria
Roseovarius atlanticus [LAXJ]
203749
203825
+
His
GTG
[ENA]
¡û
>W1610937351
LUOO01000053
Alphaproteobacteria
Maritimibacter sp. REDSEA-S28_B5 [LUOO]
23879
23803
-
His
GTG
[ENA]
¡û
>W1710013049
AOQA01000007
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
685464
685388
-
His
GTG
[ENA]
¡û
>W1710096110
CYSD01000012
Alphaproteobacteria
Tritonibacter multivorans [CYSD]
7398
7322
-
His
GTG
[ENA]
¡û
>W1710546883
FOCM01000008
Alphaproteobacteria
Palleronia pelagia pelagius [FOCM]
134526
134602
+
His
GTG
[ENA]
¡û
>W1710562499
FOOZ01000013
Alphaproteobacteria
Phaeobacter italicus italica [FOOZ]
4407
4331
-
His
GTG
[ENA]
¡û
>W1710565541
FORH01000001
Alphaproteobacteria
Celeribacter neptunius [FORH]
95598
95674
+
His
GTG
[ENA]
¡û
>W1710585643
FQWM01000007
Alphaproteobacteria
Cognatishimia maritima maritimus [FQWM]
145531
145607
+
His
GTG
[ENA]
¡û
>W1710606556
FWXX01000001
Alphaproteobacteria
Tropicibacter naphthalenivorans [FWXX]
242036
241960
-
His
GTG
[ENA]
¡û
>W1710697207
LAXJ01000008
Alphaproteobacteria
Roseovarius atlanticus [LAXJ]
203749
203825
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK