This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199595 (78 seq.)
>w001017
AAXU01000004
Bacteroidota
Algoriphagus machipongonensis PR1 [AAXU]
118281
118357
+
Arg
ACG
[ENA]
¡û
>C183001148
CP022378
Bacteroidota
Capnocytophaga cynodegmi G7591 [CP022378]
146700
146774
+
Arg
ACG
-
¡û
>C183001150
CP022380
Bacteroidota
Capnocytophaga sp. H4358 [CP022380]
2618807
2618882
+
Arg
ACG
-
¡û
>C183001151
CP022381
Bacteroidota
Capnocytophaga sp. H2931 [CP022381]
2618577
2618652
+
Arg
ACG
-
¡û
>C183001152
CP022382
Bacteroidota
Capnocytophaga canimorsus 7120 [CP022382]
1258986
1259060
+
Arg
ACG
-
¡û
>C183001159
CP022387
Bacteroidota
Capnocytophaga stomatis H2177 [CP022387]
146697
146771
+
Arg
ACG
-
¡û
>C183001160
CP022388
Bacteroidota
Capnocytophaga canimorsus H5594 [CP022388]
1200899
1200973
+
Arg
ACG
-
¡û
>C183001161
CP022389
Bacteroidota
Capnocytophaga canimorsus H3936 [CP022389]
1276175
1276249
+
Arg
ACG
-
¡û
>C193001594
CP032681
Bacteroidota
Capnocytophaga canimorsus RBWH [CP032681]
1610418
1610492
+
Arg
ACG
-
¡û
>C193003580
LR134513
Bacteroidota
Capnocytophaga canimorsus NCTC11921 [LR134513]
1224615
1224689
+
Arg
ACG
-
¡û
>W143000871
ALWO02000006
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
19913
19839
-
Arg
ACG
[ENA]
¡û
>W143000872
ALWO02000006
Bacteroidota
Indibacter alkaliphilus LW1 [ALWO]
315
239
-
Arg
ACG
[ENA]
¡û
>W143000960
AMGM01000035
Bacteroidota
Cecembia lonarensis LW9 [AMGM]
39506
39580
+
Arg
ACG
[ENA]
¡û
>W143006358
JAFX01000001
Bacteroidota
Algoriphagus marincola HL-49 [JAFX]
2298410
2298334
-
Arg
ACG
[ENA]
¡û
>W1930009231
FZOK01000002
Bacteroidota
Belliella buryatensis 5C [FZOK]
346672
346746
+
Arg
ACG
[ENA]
¡û
>W1930009232
FZOK01000002
Bacteroidota
Belliella buryatensis 5C [FZOK]
363071
363145
+
Arg
ACG
[ENA]
¡û
>W1930012513
MDGR01000007
Bacteroidota
Reichenbachiella sp. 5M10 [MDGR]
3756487
3756561
+
Arg
ACG
[ENA]
¡û
>W1930021696
NIUC01000002
Bacteroidota
Algoriphagus sp. XAY3209 [NIUC]
2085276
2085350
+
Arg
ACG
[ENA]
¡û
>W1930030679
NSDI01000005
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
55091
55016
-
Arg
ACG
[ENA]
¡û
>W1930039442
QXML01000007
Bacteroidota
Algoriphagus sp. N3 [QXML]
124512
124586
+
Arg
ACG
[ENA]
¡û
>W1830001927
PGTV01000001
Bacteroidota
Capnocytophaga canimorsus DSM 19204 [PGTV]
428352
428278
-
Arg
ACG
[ENA]
¡û
>W1830007755
PYGF01000022
Bacteroidota
Cecembia rubra DSM 28057 [PYGF]
10565
10639
+
Arg
ACG
[ENA]
¡û
>W1830010902
QCXY01000017
Bacteroidota
Pleomorphovibrio marinus SW125 [QCXY]
767
693
-
Arg
ACG
[ENA]
¡û
>W2030001994
BLBC01000014
Bacteroidota
Capnocytophaga felis KC07070 [BLBC]
192944
193018
+
Arg
ACG
[ENA]
¡û
>W2030001995
BLBD01000006
Bacteroidota
Capnocytophaga felis KC07105 [BLBD]
192675
192749
+
Arg
ACG
[ENA]
¡û
>W2030009748
FZOK01000002
Bacteroidota
Belliella buryatensis 5C [FZOK]
346672
346746
+
Arg
ACG
[ENA]
¡û
>W2030009749
FZOK01000002
Bacteroidota
Belliella buryatensis 5C [FZOK]
363071
363145
+
Arg
ACG
[ENA]
¡û
>W2030018592
MDGR01000007
Bacteroidota
Reichenbachiella sp. 5M10 [MDGR]
3756487
3756561
+
Arg
ACG
[ENA]
¡û
>W2030026457
NIUC01000002
Bacteroidota
Algoriphagus sp. XAY3209 [NIUC]
2085276
2085350
+
Arg
ACG
[ENA]
¡û
>W2030028216
NSDI01000005
Bacteroidota
Capnocytophaga canis 17-158 [NSDI]
55091
55016
-
Arg
ACG
[ENA]
¡û
>W2030033534
QXML01000007
Bacteroidota
Algoriphagus sp. N3 [QXML]
124512
124586
+
Arg
ACG
[ENA]
¡û
>W2030036643
RKQB01000014
Bacteroidota
Cyclobacteriaceae bacterium YHN15 [RKQB]
39088
39162
+
Arg
ACG
[ENA]
¡û
>W2030039537
SGXG01000001
Bacteroidota
Cecembia calidifontis DSM 21411 [SGXG]
4535597
4535523
-
Arg
ACG
[ENA]
¡û
>W2030041594
SMLW01000657
Bacteroidota
Fulvivirga kasyanovii JCM 16186 [SMLW]
7589
7663
+
Arg
ACG
[ENA]
¡û
>W2030041665
SMUW01000025
Bacteroidota
Algoriphagus sp. F21 [SMUW]
77279
77353
+
Arg
ACG
[ENA]
¡û
>W2030042028
SOEL01000001
Bacteroidota
Algoriphagus sp. ARW1R1 [SOEL]
709435
709509
+
Arg
ACG
[ENA]
¡û
>W2030042247
SORH01000003
Bacteroidota
Algoriphagus zhangzhouensis CGMCC 1.11027 [SORH]
755142
755068
-
Arg
ACG
[ENA]
¡û
>W2030042666
SPSB01000004
Bacteroidota
Algoriphagus sp. XY-J91 [SPSB]
266123
266049
-
Arg
ACG
[ENA]
¡û
>W2030044690
UFUS01000001
Bacteroidota
Capnocytophaga canimorsus NCTC12242 [UFUS]
1258986
1259060
+
Arg
ACG
[ENA]
¡û
>W2030051072
VLOG01000055
Bacteroidota
Algoriphagus sp. hg1 [VLOG]
126746
126672
-
Arg
ACG
[ENA]
¡û
>W2030051183
VMKN01000002
Bacteroidota
Litoribacter sp. XAAS-A1 [VMKN]
692
618
-
Arg
ACG
[ENA]
¡û
>W2030066289
WLVF01000002
Bacteroidota
Capnocytophaga canimorsus CCUG 17663 [WLVF]
159102
159028
-
Arg
ACG
[ENA]
¡û
>W2030066290
WLVG01000002
Bacteroidota
Capnocytophaga canis CCUG 25240 [WLVG]
35189
35265
+
Arg
ACG
[ENA]
¡û
>W2030066291
WLVH01000011
Bacteroidota
Capnocytophaga canis CCUG 42328 [WLVH]
18555
18631
+
Arg
ACG
[ENA]
¡û
>W2030066292
WLVI01000025
Bacteroidota
Capnocytophaga canis CCUG 38354 [WLVI]
36457
36532
+
Arg
ACG
[ENA]
¡û
>W2030066293
WLVJ01000040
Bacteroidota
Capnocytophaga canis GE-031 [WLVJ]
4381
4306
-
Arg
ACG
[ENA]
¡û
>C213001070
CP048415
Bacteroidota
Algoriphagus sp. NBT04N3 [CP048415]
3043785
3043711
-
Arg
ACG
-
¡û
>C233004157
CP089981
Bacteroidota
Fulvivirga sp. SS9-22 [CP089981]
1052693
1052619
-
Arg
ACG
-
¡û
>C233008272
CP106679
Bacteroidota
Reichenbachiella sp. BKB1-1 [CP106679]
899640
899714
+
Arg
ACG
-
¡û
>W2130003556
BOPJ01000002
Bacteroidota
Capnocytophaga stomatis 11058B-1 [BOPJ]
160267
160341
+
Arg
ACG
[ENA]
¡û
>W2130003557
BOPK01000005
Bacteroidota
Capnocytophaga stomatis 11022B-2 [BOPK]
208042
207968
-
Arg
ACG
[ENA]
¡û
>W2130003625
BOQF01000005
Bacteroidota
Capnocytophaga stomatis 11021B-1 [BOQF]
33772
33698
-
Arg
ACG
[ENA]
¡û
>W2130003626
BOQG01000002
Bacteroidota
Capnocytophaga cynodegmi 11019B-1 [BOQG]
411742
411668
-
Arg
ACG
[ENA]
¡û
>W2130003627
BOQH01000001
Bacteroidota
Capnocytophaga cynodegmi 11014B-1 [BOQH]
718422
718496
+
Arg
ACG
[ENA]
¡û
>W2130003628
BOQI01000001
Bacteroidota
Capnocytophaga canimorsus 12161B-4 [BOQI]
614595
614669
+
Arg
ACG
[ENA]
¡û
>W2130003629
BOQJ01000004
Bacteroidota
Capnocytophaga canimorsus 13232B-6 [BOQJ]
180837
180763
-
Arg
ACG
[ENA]
¡û
>W2130003630
BOQK01000009
Bacteroidota
Capnocytophaga canis 13235B-2 [BOQK]
76842
76918
+
Arg
ACG
[ENA]
¡û
>W2130012268
JABFHF010000023
Bacteroidota
Aquiflexum lacus CUG 91378 [JABFHF]
88388
88462
+
Arg
ACG
[ENA]
¡û
>W2130013355
JACEFJ010000004
Bacteroidota
Pararhodonellum marinum SW124 [JACEFJ]
360462
360536
+
Arg
ACG
[ENA]
¡û
>W2130017106
JACVCV010000006
Bacteroidota
Lunatimonas salinarum KCTC 42988 [JACVCV]
300048
300122
+
Arg
ACG
[ENA]
¡û
>W2130025120
JAEAGO010000003
Bacteroidota
Penaeicola halotolerans LMIT005 [JAEAGO]
362826
362752
-
Arg
ACG
[ENA]
¡û
>W2130028209
JAEUGD010000042
Bacteroidota
Fulvivirga sp. 29W222 [JAEUGD]
428997
429071
+
Arg
ACG
[ENA]
¡û
>W2130035485
JAHBGI010000005
Bacteroidota
Litoribacter ruber KCTC 22899 [JAHBGI]
541
467
-
Arg
ACG
[ENA]
¡û
>W2130035551
JAHCMY010000003
Bacteroidota
Litoribacter alkaliphilus KCTC 32217 [JAHCMY]
395067
395141
+
Arg
ACG
[ENA]
¡û
>W2130038505
JAHVHP010000004
Bacteroidota
Algoriphagus marincola DP5N14-6 [JAHVHP]
69166
69240
+
Arg
ACG
[ENA]
¡û
>W2130041707
JAIXNE010000005
Bacteroidota
Fulvivirga sp. 1062 [JAIXNE]
98898
98824
-
Arg
ACG
[ENA]
¡û
>W2130044050
RPHB01000003
Bacteroidota
Arthrospiribacter ruber DPMB0001 [RPHB]
656784
656858
+
Arg
ACG
[ENA]
¡û
>C11300159
CP002113
Bacteroidota
Capnocytophaga canimorsus Cc5 [CP002113]
2140091
2140167
+
Arg
ACG
[Ensembl]
¡û
>C123000151
CP003281
Bacteroidota
Belliella baltica DSM 15883 [CP003281]
2032054
2032130
+
Arg
ACG
[Ensembl]
¡û
>W123001479
AJMQ01000117
Bacteroidota
Marinilabilia nitratireducens AK2 [AJMQ]
11676
11750
+
Arg
ACG
[ENA]
¡û
>W123001662
AJYA01000056
Bacteroidota
Nitritalea halalkaliphila LW7 [AJYA]
7276
7352
+
Arg
ACG
[ENA]
¡û
>W133001187
AMZN01000055
Bacteroidota
Fulvivirga imtechensis AK7 [AMZN]
216230
216306
+
Arg
ACG
[ENA]
¡û
>W133001199
AMZY02000024
Bacteroidota
Mariniradius saccharolyticus AK6 [AMZY]
27772
27846
+
Arg
ACG
[ENA]
¡û
>W133002886
AQHR01000004
Bacteroidota
Lunatimonas lonarensis AK24 [AQHR]
54037
54111
+
Arg
ACG
[ENA]
¡û
>W133003182
ARAI01000038
Bacteroidota
Capnocytophaga cynodegmi DSM 19736 [ARAI]
15503
15579
+
Arg
ACG
[ENA]
¡û
>W133004600
AUBU01000015
Bacteroidota
Algoriphagus marincola DSM 16067 [AUBU]
25298
25222
-
Arg
ACG
[ENA]
¡û
>W133004601
AUBV01000005
Bacteroidota
Algoriphagus mannitolivorans DSM 15301 [AUBV]
126177
126253
+
Arg
ACG
[ENA]
¡û
>W133004604
AUBX01000010
Bacteroidota
Algoriphagus vanfongensis DSM 17529 [AUBX]
789401
789325
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK