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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199595 (23 seq.)
>W1711705112
MSQD01000012
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
79476
79552
+
Arg
CCT
[ENA]
¡û
>W131108959
APGP01000073
Bacillota
Caldicellulosiruptor sp. F32 [APGP]
1862
1786
-
Arg
CCT
[ENA]
¡û
>C006927
CP000679
Bacillota
Caldicellulosiruptor saccharolyticus DSM 8903 [CP000679]
1617941
1617865
-
Arg
CCT
[Ensembl]
¡û
>WENV180014248
FPIC01113305
[FPIC] soil metagenome; Soil
147
223
+
Arg
CCT
[ENA]
¢þ
>WENV181226142
OFDK01000094
[OFDK] hot springs metagenome; Yellowstone National Park, Wyoming, USA
37327
37251
-
Arg
CCT
[ENA]
¢þ
>WENV181411497
OGCI01028159
[OGCI] hot springs metagenome; Hot spring water
1001
1077
+
Arg
CCT
[ENA]
¢þ
>W141193958
AYSN01000025
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
9849
9925
+
Arg
CCT
[ENA]
¡û
>W141238328
BBKT01000006
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
41307
41231
-
Arg
CCT
[ENA]
¡û
>C181021893
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
1214878
1214954
+
Arg
CCT
-
¡û
>C191131130
CP034791
Bacillota
Caldicellulosiruptor changbaiensis CBS-Z [CP034791]
936519
936443
-
Arg
CCT
-
¡û
>W09135025
ACVG01000084
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
1264
1188
-
Arg
CCT
[ENA]
¡û
>W1910747740
MINB01000047
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
6079
6003
-
Arg
CCT
[ENA]
¡û
>W1910976704
NKHD01000013
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
11057
10981
-
Arg
CCT
[ENA]
¡û
>W1810721101
QNRS01000021
Bacillota
Garciella nitratireducens GHB3 [QNRS]
2820
2744
-
Arg
CCT
[ENA]
¡û
>C151045289
CP009170
Bacillota
Thermoanaerobacter kivui DSM 2030; LKT-1 [CP009170]
553067
553143
+
Arg
CCT
[Ensembl]
¡û
>C10113810
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
48517
48593
+
Arg
CCT
[Ensembl]
¡û
>C11105217
CP002219
Bacillota
Caldicellulosiruptor hydrothermalis 108 [CP002219]
1842471
1842547
+
Arg
CCT
[Ensembl]
¡û
>C11123276
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
50885
50961
+
Arg
CCT
[Ensembl]
¡û
>W1511564059
LACO01000001
Bacillota
Caldicellulosiruptor morganii Rt8.B8 [LACO]
1933450
1933526
+
Arg
CCT
[ENA]
¡û
>W11150433
AEVQ01000004
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
254967
255043
+
Arg
CCT
[ENA]
¡û
>C121007608
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
645877
645953
+
Arg
CCT
[Ensembl]
¡û
>C131001897
CP003066
Bacillota
Thermoanaerobacterium thermosaccharolyticum M0795 [CP003066]
35359
35435
+
Arg
CCT
[Ensembl]
¡û
>W1710600858
FUWV01000011
Bacillota
Garciella nitratireducens DSM 15102 [FUWV]
35688
35612
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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