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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199656 (27 seq.)
>W141095972
AVFB02000001
Gammaproteobacteria
Pseudomonas putida S13.1.2 [AVFB]
1675942
1675866
-
Arg
ACG
[ENA]
¡û
>WENV181193262
OEPS011695004
[OEPS] soil metagenome; soil
6
82
+
Arg
ACG
[ENA]
¢þ
>W141154055
AXDX01000050
Gammaproteobacteria
Pseudomonas putida SJ3 [AXDX]
5690
5614
-
Arg
ACG
[ENA]
¡û
>W141201654
AZBL01000036
Gammaproteobacteria
Pseudomonas putida OUS82 [AZBL]
5585
5509
-
Arg
ACG
[ENA]
¡û
>WENV170022647
BCQK01030275
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
9
85
+
Arg
ACG
[ENA]
¢þ
>WENV170022648
BCQK01030275
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
157
233
+
Arg
ACG
[ENA]
¢þ
>WENV170022649
BCQK01030275
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
307
383
+
Arg
ACG
[ENA]
¢þ
>W141427239
JENF01000190
Gammaproteobacteria
Pseudomonas monteilii [JENF]
51592
51516
-
Arg
ACG
[ENA]
¡û
>W141427240
JENF01000190
Gammaproteobacteria
Pseudomonas monteilii [JENF]
51443
51367
-
Arg
ACG
[ENA]
¡û
>C181001195
AP015029
Gammaproteobacteria
Pseudomonas putida KF715 [AP015029]
4842579
4842503
-
Arg
ACG
-
¡û
>W09104211
AALM01000018
Gammaproteobacteria
Pseudomonas putida F1 [AALM]
62422
62346
-
Arg
ACG
[ENA]
¡û
>W09104212
AALM01000018
Gammaproteobacteria
Pseudomonas putida F1 [AALM]
62273
62197
-
Arg
ACG
[ENA]
¡û
>W09104213
AALM01000018
Gammaproteobacteria
Pseudomonas putida F1 [AALM]
62122
62046
-
Arg
ACG
[ENA]
¡û
>W09104214
AALM01000018
Gammaproteobacteria
Pseudomonas putida F1 [AALM]
61972
61896
-
Arg
ACG
[ENA]
¡û
>W1910504823
FYDS01000009
Gammaproteobacteria
Pseudomonas sp. Irchel 3F3 [FYDS]
250517
250593
+
Arg
ACG
[ENA]
¡û
>W1810209331
POGQ01000017
Gammaproteobacteria
Pseudomonas sp. GW460-5 [POGQ]
5600
5524
-
Arg
ACG
[ENA]
¡û
>W1810209420
POGR01000061
Gammaproteobacteria
Pseudomonas sp. FW305-130 [POGR]
31203
31279
+
Arg
ACG
[ENA]
¡û
>W1810209458
POGS01000016
Gammaproteobacteria
Pseudomonas sp. FW306-2-2C-D06B [POGS]
5642
5566
-
Arg
ACG
[ENA]
¡û
>C151074900
CP010979
Gammaproteobacteria
Pseudomonas putida S13.1.2 [CP010979]
62487
62563
+
Arg
ACG
[Ensembl]
¡û
>W1610047207
BBDC01000047
Gammaproteobacteria
Pseudomonas putida JCM 18798 [BBDC]
2353
2277
-
Arg
ACG
[ENA]
¡û
>W1610060014
BCBK01000087
Gammaproteobacteria
Pseudomonas sp. NBRC 111134 [BCBK]
5519
5443
-
Arg
ACG
[ENA]
¡û
>C131016600
CP005976
Gammaproteobacteria
Pseudomonas putida H8234 [CP005976]
5169469
5169393
-
Arg
ACG
[Ensembl]
¡û
>C131016601
CP005976
Gammaproteobacteria
Pseudomonas putida H8234 [CP005976]
5169320
5169244
-
Arg
ACG
[Ensembl]
¡û
>C131016602
CP005976
Gammaproteobacteria
Pseudomonas putida H8234 [CP005976]
5169171
5169095
-
Arg
ACG
[Ensembl]
¡û
>W1710043812
BBDC01000047
Gammaproteobacteria
Pseudomonas putida JCM 18798 [BBDC]
2353
2277
-
Arg
ACG
[ENA]
¡û
>W1710057137
BCBK01000087
Gammaproteobacteria
Pseudomonas sp. NBRC 111134 [BCBK]
5519
5443
-
Arg
ACG
[ENA]
¡û
>W1710057573
BCBR01000230
Gammaproteobacteria
Pseudomonas sp. NBRC 111141 [BCBR]
2595
2519
-
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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