This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199861 (59 seq.)
>W1710867322
LMIE01000008
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
3422
3346
-
Met
CAT
[ENA]
¡û
>W1710877831
LMQL01000008
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
382899
382975
+
Met
CAT
[ENA]
¡û
>W1711394922
MESO01000030
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
1031
955
-
Met
CAT
[ENA]
¡û
>W1711394938
MESO01000045
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
5302
5226
-
Met
CAT
[ENA]
¡û
>W1711394943
MESO01000050
Betaproteobacteria
Burkholderiales bacterium RIFOXYC12_FULL_65_23 [MESO]
1738
1662
-
Met
CAT
[ENA]
¡û
>W131178402
ARLO01000048
Betaproteobacteria
Curvibacter lanceolatus ATCC 14669 [ARLO]
70251
70175
-
Met
CAT
[ENA]
¡û
>PL171000247
CP000531
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 plasmid:pPNAP02
143245
143169
-
Met
CAT
[ENA]
¡û
>W131226940
AUET01000010
Betaproteobacteria
Comamonadaceae bacterium URHA0028 [AUET]
473835
473911
+
Met
CAT
[ENA]
¡û
>C017282
CP000529
Betaproteobacteria
Polaromonas naphthalenivorans CJ2 [CP000529]
343179
343255
+
Met
CAT
[Ensembl]
¡û
>C017327
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
512117
512193
+
Met
CAT
[Ensembl]
¡û
>C171049767
CP016449
Betaproteobacteria
Hydrogenophaga sp. RAC07 [CP016449]
207803
207879
+
Met
CAT
-
¡û
>WENV180020687
FTDA01000945
[FTDA] metagenome; soil
4692
4768
+
fMet
CAT
[ENA]
¢þ
>WENV180022981
FTHB01000230
[FTHB] metagenome; soil
45
121
+
fMet
CAT
[ENA]
¢þ
>WENV180208643
OBAJ01012987
[OBAJ] marine metagenome; Coastal water
362
438
+
fMet
CAT
[ENA]
¢þ
>WENV180377292
OBON01008689
[OBON] marine metagenome; sea water
401
325
-
fMet
CAT
[ENA]
¢þ
>WENV180391117
OBPM01012825
[OBPM] marine metagenome; ENVO:00002010
644
568
-
fMet
CAT
[ENA]
¢þ
>WENV180392981
OBPP01038480
[OBPP] marine metagenome; ENVO:00002042
20
96
+
fMet
CAT
[ENA]
¢þ
>WENV180395314
OBPT01008524
[OBPT] marine metagenome; ENVO:00002010 seawater
1523
1599
+
fMet
CAT
[ENA]
¢þ
>WENV180591148
OCOV01000905
[OCOV] marine metagenome; ENVO:01000301
1278
1354
+
fMet
CAT
[ENA]
¢þ
>WENV181046943
ODXX01030415
[ODXX] human metagenome; G_DNA_Buccal mucosa
168
244
+
fMet
CAT
[ENA]
¢þ
>WENV181324617
OFLF01021564
[OFLF] marine metagenome; melt pond
122
46
-
fMet
CAT
[ENA]
¢þ
>WENV181367828
OFQD01000857
[OFQD] freshwater metagenome; Freshwater Lake
782
706
-
fMet
CAT
[ENA]
¢þ
>WENV181368020
OFQE01003057
[OFQE] freshwater metagenome; Freshwater Lake
262
338
+
fMet
CAT
[ENA]
¢þ
>WENV181369028
OFQN01010965
[OFQN] freshwater metagenome; Freshwater Lake
415
339
-
fMet
CAT
[ENA]
¢þ
>WENV181369496
OFQP01004565
[OFQP] freshwater metagenome; Freshwater Lake
1350
1274
-
fMet
CAT
[ENA]
¢þ
>WENV181370081
OFQR01012284
[OFQR] freshwater metagenome; Freshwater Lake
509
585
+
fMet
CAT
[ENA]
¢þ
>WENV181392035
OFRV01004610
[OFRV] freshwater metagenome; Freshwater Lake
321
397
+
fMet
CAT
[ENA]
¢þ
>WENV181395821
OFSB01006564
[OFSB] freshwater metagenome; Freshwater Lake
79
155
+
fMet
CAT
[ENA]
¢þ
>C08007641
CP000316
Betaproteobacteria
Polaromonas sp. JS666 [CP000316]
512117
512193
+
Met
CAT
[Ensembl]
¡û
>W141276688
JADZ01000014
Betaproteobacteria
Curvibacter gracilis ATCC BAA-807 [JADZ]
150700
150776
+
Met
CAT
[ENA]
¡û
>WENV183676636
ORJL011649783
[ORJL] groundwater metagenome; groundwater
404
328
-
fMet
CAT
[ENA]
¢þ
>WENV183679328
ORMF010047949
[ORMF] groundwater metagenome; groundwater
146
222
+
fMet
CAT
[ENA]
¢þ
>WENV183696557
ORMF012574934
[ORMF] groundwater metagenome; groundwater
280
204
-
fMet
CAT
[ENA]
¢þ
>WENV170019833
BBPE01000852
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
17971
18047
+
Met
CAT
[ENA]
¢þ
>WENV170554927
CXWK01091353
[CXWK] wastewater metagenome; activated sludge
3111
3035
-
Met
CAT
[ENA]
¢þ
>WENV170559286
CXWL01117778
[CXWL] groundwater metagenome; biofilm material
879
955
+
Met
CAT
[ENA]
¢þ
>WENV170639658
JFJP01005690
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
45014
45090
+
Met
CAT
[ENA]
¢þ
>C191073191
CP031013
Betaproteobacteria
Polaromonas sp. SP1 [CP031013]
950445
950369
-
Met
CAT
-
¡û
>W09101612
AAFQ02000004
Betaproteobacteria
Polaromonas sp. JS666 [AAFQ]
124894
124970
+
Met
CAT
[ENA]
¡û
>W1910699893
MERZ01000331
Betaproteobacteria
Burkholderiales bacterium RIFCSPHIGHO2_12_FULL_61_11 [MERZ]
31842
31766
-
Met
CAT
[ENA]
¡û
>W1910859511
NBZV01000026
Betaproteobacteria
Polaromonas sp. AER18D-145 [NBZV]
5740
5664
-
Met
CAT
[ENA]
¡û
>W1910859548
NBZW01000020
Betaproteobacteria
Polaromonas sp. AET17H-212 [NBZW]
6406
6330
-
Met
CAT
[ENA]
¡û
>SRA1004189
SRR002328.190446
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
109
33
-
Met
CAT
[SRA]
>SRA1004238
SRR002328.216529
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
130
206
+
Met
CAT
[SRA]
>SRA1004304
SRR002328.258734
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
188
264
+
Met
CAT
[SRA]
>W1810354958
PVLQ01000004
Betaproteobacteria
Malikia granosa P1 [PVLQ]
28046
28122
+
Met
CAT
[ENA]
¡û
>W1810354959
PVLQ01000005
Betaproteobacteria
Malikia granosa P1 [PVLQ]
283
207
-
Met
CAT
[ENA]
¡û
>W1810354982
PVLQ01000017
Betaproteobacteria
Malikia granosa P1 [PVLQ]
34379
34303
-
Met
CAT
[ENA]
¡û
>W1810355027
PVLR01000005
Betaproteobacteria
Malikia spinosa 83 [PVLR]
84
160
+
Met
CAT
[ENA]
¡û
>W1810355035
PVLR01000012
Betaproteobacteria
Malikia spinosa 83 [PVLR]
41242
41318
+
Met
CAT
[ENA]
¡û
>W1810355041
PVLR01000013
Betaproteobacteria
Malikia spinosa 83 [PVLR]
5874
5798
-
Met
CAT
[ENA]
¡û
>SRA1052718
SRR035098.260404
454 Sequencing (SRP001819)
203
127
-
Met
CAT
[SRA]
>C11118984
CP000245
Betaproteobacteria
Ramlibacter tataouinensis TTB310 [CP000245]
3843623
3843547
-
Met
CAT
[Ensembl]
¡û
>WENV058506
AACY023331432
Marine microbial communities from Global Ocean Sampling (GOS)
430
354
-
Met
CAT
[ENA]
>WENV058858
AACY023344693
Marine microbial communities from Global Ocean Sampling (GOS)
1050
974
-
Met
CAT
[ENA]
>W121084918
AKIV01000065
Betaproteobacteria
Polaromonas sp. CF318 [AKIV]
75091
75167
+
Met
CAT
[ENA]
¡û
>W1610729668
LMIE01000008
Betaproteobacteria
Hydrogenophaga sp. Root209 [LMIE]
3422
3346
-
Met
CAT
[ENA]
¡û
>W1610740177
LMQL01000008
Betaproteobacteria
Ramlibacter sp. Leaf400 [LMQL]
382899
382975
+
Met
CAT
[ENA]
¡û
>W1710578310
FPBM01000005
Betaproteobacteria
Polaromonas sp. YR568 [FPBM]
151803
151727
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK