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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199869 (33 seq.)
>W131214850
ATUN01000001
Mycoplasmatota
Mesomycoplasma moatsii ATCC 27625 [ATUN]
37093
37169
+
Met
CAT
[ENA]
¡û
>C013839
AE017308
Mycoplasmatota
Mycoplasma mobile 163K [AE017308]
474753
474677
-
Met
CAT
[Ensembl]
¡û
>W141051163
AMWK01000006
Mycoplasmatota
Metamycoplasma alkalescens 14918 [AMWK]
49771
49695
-
Met
CAT
[ENA]
¡û
>WENV180789121
ODIS01246074
[ODIS] human metagenome; G_DNA_Supragingival plaque
95
171
+
Met
CAT
[ENA]
¢þ
>WENV180810269
ODJK01193774
[ODJK] human metagenome; G_DNA_Subgingival plaque
70
146
+
Met
CAT
[ENA]
¢þ
>WENV181077317
OEAP01041723
[OEAP] human metagenome; G_DNA_Supragingival plaque
81
5
-
Met
CAT
[ENA]
¢þ
>WENV181080661
OEAS01066294
[OEAS] human metagenome; G_DNA_Supragingival plaque
999
923
-
Met
CAT
[ENA]
¢þ
>W141464191
JFKH01000045
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKH]
662
586
-
Met
CAT
[ENA]
¡û
>W141464220
JFKI01000027
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKI]
20915
20991
+
Met
CAT
[ENA]
¡û
>W141464280
JFKK01000017
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKK]
26874
26950
+
Met
CAT
[ENA]
¡û
>W141464297
JFKL01000023
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKL]
527
451
-
Met
CAT
[ENA]
¡û
>W141464348
JFKM01000011
Mycoplasmatota
Metamycoplasma hyosynoviae [JFKM]
660
584
-
Met
CAT
[ENA]
¡û
>PL191001705
LR214939
Tenericutes
Mycoplasma salivarium NCTC10113 plasmid:2 (LR214939)
162220
162144
-
Met
CAT
[ENA]
¡û
>PL191001764
LR214986
Tenericutes
Mycoplasma cynos NCTC10142 plasmid:13 (LR214986)
216817
216893
+
Met
CAT
[ENA]
¡û
>C181176684
CP029295
Mycoplasmatota
[Mycoplasma] phocae 105 [CP029295]
588901
588825
-
Met
CAT
-
¡û
>C181188017
CP030103
Mycoplasmatota
Metamycoplasma cloacale NCTC 10199 [CP030103]
375966
376042
+
Met
CAT
-
¡û
>C191008254
CP008748
Mycoplasmatota
Metamycoplasma hyosynoviae M60 [CP008748]
438751
438827
+
Met
CAT
-
¡û
>C191118056
CP034044
Mycoplasmatota
Mycoplasma struthionis 237IA [CP034044]
639449
639373
-
Met
CAT
-
¡û
>C191218376
LR215022
Mycoplasmatota
Mycoplasmopsis californica NCTC10189 [LR215022]
61415
61491
+
Met
CAT
-
¡û
>C191218434
LR215024
Mycoplasmatota
Mycoplasmopsis glycophila NCTC10194 [LR215024]
166331
166407
+
Met
CAT
-
¡û
>C191218571
LR215036
Mycoplasmatota
Mycoplasmopsis citelli NCTC10181 [LR215036]
463691
463615
-
Met
CAT
-
¡û
>C191218619
LR215039
Mycoplasmatota
Mycoplasmopsis columboralis NCTC10179 [LR215039]
840265
840341
+
Met
CAT
-
¡û
>C191218863
LR215049
Mycoplasmatota
Metamycoplasma cloacale NCTC10199 [LR215049]
369154
369078
-
Met
CAT
-
¡û
>C191224751
LS991949
Mycoplasmatota
Metamycoplasma alkalescens NCTC10135 [LS991949]
121273
121349
+
Met
CAT
-
¡û
>W141731810
JNJL01000016
Mycoplasmatota
Metamycoplasma cloacale ATCC 35276 [JNJL]
12248
12172
-
Met
CAT
[ENA]
¡û
>W141732376
JNKA01000007
Mycoplasmatota
Mycoplasmopsis felis ATCC 23391 [JNKA]
35103
35027
-
Met
CAT
[ENA]
¡û
>W1911768451
QXGN01000008
Mycoplasmatota
Mycoplasmopsis gallopavonis WR1 [QXGN]
20640
20564
-
Met
CAT
[ENA]
¡û
>W1810675904
QKLP01000013
Mycoplasmatota
Metamycoplasma alkalescens ATCC 29103 [QKLP]
11689
11613
-
Met
CAT
[ENA]
¡û
>C151002643
AP014631
Mycoplasmatota
Metamycoplasma canadense HAZ360_1 [AP014631]
550776
550852
+
Met
CAT
[Ensembl]
¡û
>W10116154
ADNC01000027
Mycoplasmatota
Mycoplasmopsis alligatoris A21JP2 [ADNC]
268333
268409
+
Met
CAT
[ENA]
¡û
>W11120688
ADNC01000027
Mycoplasmatota
Mycoplasmopsis alligatoris A21JP2 [ADNC]
268333
268409
+
Met
CAT
[ENA]
¡û
>W121060459
AJFQ01000005
Mycoplasmatota
Mycoplasmopsis canis PG 14 [AJFQ]
291
367
+
Met
CAT
[ENA]
¡û
>W121060521
AJFS01000004
Mycoplasmatota
Mycoplasmopsis canis UF33 [AJFS]
291
367
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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