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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199898 (9 seq.)
>W1710888850
LNAA01000006
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
89274
89199
-
Arg
CCT
[ENA]
¡û
>C025513
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
1340921
1340994
+
Arg
CCT
[Ensembl]
¡û
>WENV180012772
FMSI01019452
[FMSI] soil metagenome; Soil
12637
12712
+
Arg
CCT
[ENA]
¢þ
>WENV181414478
OGCL01000462
[OGCL] hot springs metagenome; Hot spring water
4243
4318
+
Arg
CCT
[ENA]
¢þ
>C181030473
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
2131407
2131482
+
Arg
CCT
-
¡û
>C191001223
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
1282435
1282358
-
Arg
CCT
-
¡û
>C191085225
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
2475738
2475664
-
Arg
CCT
-
¡û
>C141007952
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
700549
700472
-
Arg
CCT
-
¡û
>W1610749228
LNAA01000006
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
89274
89199
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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