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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.199988 (115 seq.)
>W1710915776
LNUM01000007
Bacillota
Pediococcus acidilactici [LNUM]
9113
9038
-
Arg
ACG
[ENA]
¡û
>W1711005639
LQNR01000048
Bacillota
Pediococcus acidilactici [LQNR]
36102
36027
-
Arg
ACG
[ENA]
¡û
>W1711025280
LRBW01000017
Bacillota
Pediococcus acidilactici [LRBW]
60474
60399
-
Arg
ACG
[ENA]
¡û
>W131146242
AQGT01000005
Bacillota
Pediococcus acidilactici D3 [AQGT]
32009
32084
+
Arg
ACG
[ENA]
¡û
>W131239183
BANK01000011
Bacillota
Pediococcus acidilactici NGRI 0510Q [BANK]
10276
10201
-
Arg
ACG
[ENA]
¡û
>W1711372489
MDTN01000010
Bacillota
Lactobacillus jensenii [MDTN]
16037
15962
-
Arg
ACG
[ENA]
¡û
>W1711372499
MDTN01000025
Bacillota
Lactobacillus jensenii [MDTN]
78056
77981
-
Arg
ACG
[ENA]
¡û
>W1711585754
MOAB01000001
Bacillota
Pediococcus acidilactici [MOAB]
110496
110571
+
Arg
ACG
[ENA]
¡û
>C171036814
CP015206
Bacillota
Pediococcus acidilactici ZPA017 [CP015206]
937682
937607
-
Arg
ACG
-
¡û
>C171083296
CP018763
Bacillota
Pediococcus acidilactici BCC1 [CP018763]
1644254
1644179
-
Arg
ACG
-
¡û
>C171084506
CP018809
Bacillota
Lactobacillus jensenii SNUV360 [CP018809]
1507476
1507551
+
Arg
ACG
-
¡û
>C171084520
CP018809
Bacillota
Lactobacillus jensenii SNUV360 [CP018809]
1343829
1343754
-
Arg
ACG
-
¡û
>C171119603
CP021484
Bacillota
Pediococcus acidilactici SRCM100424 [CP021484]
1571956
1571881
-
Arg
ACG
-
¡û
>C171120463
CP021529
Bacillota
Pediococcus acidilactici SRCM101189 [CP021529]
1571966
1571891
-
Arg
ACG
-
¡û
>W131226364
AUEI01000001
Bacillota
Lactobacillus psittaci DSM 15354 [AUEI]
900
976
+
Arg
ACG
[ENA]
¡û
>W131226407
AUEI01000009
Bacillota
Lactobacillus psittaci DSM 15354 [AUEI]
6700
6626
-
Arg
ACG
[ENA]
¡û
>WENV180810540
ODJL01000012
[ODJL] human metagenome; G_DNA_Posterior fornix
5016
4941
-
Arg
ACG
[ENA]
¢þ
>WENV180810554
ODJL01000061
[ODJL] human metagenome; G_DNA_Posterior fornix
429
354
-
Arg
ACG
[ENA]
¢þ
>WENV180845100
ODKS01000006
[ODKS] human metagenome; G_DNA_Posterior fornix
3678
3753
+
Arg
ACG
[ENA]
¢þ
>WENV180845168
ODKS01000112
[ODKS] human metagenome; G_DNA_Posterior fornix
4912
4837
-
Arg
ACG
[ENA]
¢þ
>WENV180887070
ODMF01000016
[ODMF] human metagenome; G_DNA_Posterior fornix
51472
51547
+
Arg
ACG
[ENA]
¢þ
>WENV180912565
ODSK01000011
[ODSK] human metagenome; G_DNA_Posterior fornix
45025
45100
+
Arg
ACG
[ENA]
¢þ
>WENV180912598
ODSK01000068
[ODSK] human metagenome; G_DNA_Posterior fornix
995
920
-
Arg
ACG
[ENA]
¢þ
>WENV180914357
ODSW01000062
[ODSW] human metagenome; G_DNA_Posterior fornix
13513
13588
+
Arg
ACG
[ENA]
¢þ
>W141094697
AVCU01000049
Bacillota
Lactobacillus jensenii MD IIE-70(2) [AVCU]
914
989
+
Arg
ACG
[ENA]
¡û
>W141094712
AVCU01000060
Bacillota
Lactobacillus jensenii MD IIE-70(2) [AVCU]
5443
5368
-
Arg
ACG
[ENA]
¡û
>WENV181057218
ODYK01000351
[ODYK] human metagenome; G_DNA_Posterior fornix
42
117
+
Arg
ACG
[ENA]
¢þ
>WENV181131357
OEGB01000043
[OEGB] human metagenome; G_DNA_Posterior fornix
73
148
+
Arg
ACG
[ENA]
¢þ
>W141280126
JAGU01000001
Bacillota
Pediococcus acidilactici AGR20 [JAGU]
1468290
1468365
+
Arg
ACG
[ENA]
¡û
>WENV183762344
PPYE01275513
[PPYE] human gut metagenome; stool from patient with ulcerative colitis
2624
2549
-
Arg
ACG
[ENA]
¢þ
>C191035361
CP025471
Bacillota
Pediococcus acidilactici PB22 [CP025471]
1508854
1508779
-
Arg
ACG
-
¡û
>C191106187
CP033438
Bacillota
Pediococcus acidilactici ATCC 8042 [CP033438]
557305
557380
+
Arg
ACG
-
¡û
>C191135599
CP035151
Bacillota
Pediococcus acidilactici SRCM103367 [CP035151]
1415043
1414968
-
Arg
ACG
-
¡û
>C191135657
CP035154
Bacillota
Pediococcus acidilactici SRCM103387 [CP035154]
1534109
1534034
-
Arg
ACG
-
¡û
>C191137789
CP035266
Bacillota
Pediococcus acidilactici SRCM103444 [CP035266]
439523
439598
+
Arg
ACG
-
¡û
>W09110887
ABWG01000002
Bacillota
Lactobacillus jensenii 1153 [ABWG]
6433
6358
-
Arg
ACG
[ENA]
¡û
>W09110897
ABWG01000005
Bacillota
Lactobacillus jensenii 1153 [ABWG]
136145
136220
+
Arg
ACG
[ENA]
¡û
>W09122990
ACGQ01000022
Bacillota
Lactobacillus jensenii JV-V16 [ACGQ]
1619
1544
-
Arg
ACG
[ENA]
¡û
>W09123011
ACGQ01000052
Bacillota
Lactobacillus jensenii JV-V16 [ACGQ]
9620
9545
-
Arg
ACG
[ENA]
¡û
>W09133308
ACOY01000026
Bacillota
Lactobacillus jensenii 269-3 [ACOY]
549
624
+
Arg
ACG
[ENA]
¡û
>W09133320
ACOY01000032
Bacillota
Lactobacillus jensenii 269-3 [ACOY]
4922
4847
-
Arg
ACG
[ENA]
¡û
>W1910181670
BJMF01000003
Bacillota
Pediococcus acidilactici NBRC 12231 [BJMF]
121650
121575
-
Arg
ACG
[ENA]
¡û
>W1910373931
FUHV01000006
Bacillota
Pediococcus acidilactici S7 [FUHV]
230025
229950
-
Arg
ACG
[ENA]
¡û
>W1911696876
QNGC01000024
Bacillota
Pediococcus acidilactici GS1 [QNGC]
83760
83685
-
Arg
ACG
[ENA]
¡û
>W1911798504
QYRQ01000037
Bacillota
Pediococcus acidilactici WT [QYRQ]
83788
83713
-
Arg
ACG
[ENA]
¡û
>W1810001085
BEXE01000005
Bacillota
Apilactobacillus micheneri NBRC 113063 [BEXE]
58348
58273
-
Arg
ACG
[ENA]
¡û
>W1810001107
BEXE01000006
Bacillota
Apilactobacillus micheneri NBRC 113063 [BEXE]
47277
47202
-
Arg
ACG
[ENA]
¡û
>W1810049834
PCYQ01000002
Bacillota
Pediococcus acidilactici UMNPBX20 [PCYQ]
90552
90627
+
Arg
ACG
[ENA]
¡û
>W1810190561
PKJY01000004
Bacillota
Lactobacillus jensenii UMB0077 [PKJY]
5010
4935
-
Arg
ACG
[ENA]
¡û
>W1810190592
PKJY01000061
Bacillota
Lactobacillus jensenii UMB0077 [PKJY]
1031
956
-
Arg
ACG
[ENA]
¡û
>W1810190619
PKJZ01000006
Bacillota
Lactobacillus jensenii UMB0007 [PKJZ]
5172
5097
-
Arg
ACG
[ENA]
¡û
>W1810190645
PKJZ01000049
Bacillota
Lactobacillus jensenii UMB0007 [PKJZ]
706
781
+
Arg
ACG
[ENA]
¡û
>W1810222697
POSN01000001
Bacillota
Apilactobacillus quenuiae HV_6 [POSN]
426692
426617
-
Arg
ACG
[ENA]
¡û
>W1810222721
POSN01000002
Bacillota
Apilactobacillus quenuiae HV_6 [POSN]
79157
79082
-
Arg
ACG
[ENA]
¡û
>W1810222747
POSO01000001
Bacillota
Apilactobacillus micheneri Hlig3 [POSO]
78721
78646
-
Arg
ACG
[ENA]
¡û
>W1810222769
POSO01000003
Bacillota
Apilactobacillus micheneri Hlig3 [POSO]
366209
366134
-
Arg
ACG
[ENA]
¡û
>W1810222883
POST01000001
Bacillota
Apilactobacillus timberlakei HV_12 [POST]
80015
79940
-
Arg
ACG
[ENA]
¡û
>W10101926
ACOF01000001
Bacillota
Lactobacillus jensenii 27-2-CHN [ACOF]
545
620
+
Arg
ACG
[ENA]
¡û
>W10101964
ACOF01000045
Bacillota
Lactobacillus jensenii 27-2-CHN [ACOF]
42881
42956
+
Arg
ACG
[ENA]
¡û
>W10103238
ACQD01000058
Bacillota
Lactobacillus jensenii SJ-7A-US [ACQD]
51375
51450
+
Arg
ACG
[ENA]
¡û
>W10103260
ACQD01000069
Bacillota
Lactobacillus jensenii SJ-7A-US [ACQD]
545
620
+
Arg
ACG
[ENA]
¡û
>W10103474
ACQN01000014
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
545
620
+
Arg
ACG
[ENA]
¡û
>W10103509
ACQN01000036
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
1611
1536
-
Arg
ACG
[ENA]
¡û
>W10105150
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
224591
224516
-
Arg
ACG
[ENA]
¡û
>W10112234
ADEX01000047
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
50869
50944
+
Arg
ACG
[ENA]
¡û
>W10112238
ADEX01000067
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
16527
16602
+
Arg
ACG
[ENA]
¡û
>W10112287
ADEX01000197
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
545
620
+
Arg
ACG
[ENA]
¡û
>W11102082
ACOF01000001
Bacillota
Lactobacillus jensenii 27-2-CHN [ACOF]
545
620
+
Arg
ACG
[ENA]
¡û
>W11102120
ACOF01000045
Bacillota
Lactobacillus jensenii 27-2-CHN [ACOF]
42881
42956
+
Arg
ACG
[ENA]
¡û
>W11103394
ACQD01000058
Bacillota
Lactobacillus jensenii SJ-7A-US [ACQD]
51375
51450
+
Arg
ACG
[ENA]
¡û
>W11103416
ACQD01000069
Bacillota
Lactobacillus jensenii SJ-7A-US [ACQD]
545
620
+
Arg
ACG
[ENA]
¡û
>W11103630
ACQN01000014
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
545
620
+
Arg
ACG
[ENA]
¡û
>W11103665
ACQN01000036
Bacillota
Lactobacillus jensenii 115-3-CHN [ACQN]
1611
1536
-
Arg
ACG
[ENA]
¡û
>W11107470
ACXB01000014
Bacillota
Pediococcus acidilactici 7_4 [ACXB]
224591
224516
-
Arg
ACG
[ENA]
¡û
>W11115455
ADEX01000047
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
50869
50944
+
Arg
ACG
[ENA]
¡û
>W11115459
ADEX01000067
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
16527
16602
+
Arg
ACG
[ENA]
¡û
>W11115508
ADEX01000197
Bacillota
Lactobacillus jensenii 208-1 [ADEX]
545
620
+
Arg
ACG
[ENA]
¡û
>W121011514
AGKB01000010
Bacillota
Pediococcus acidilactici MA18/5M [AGKB]
225249
225174
-
Arg
ACG
[ENA]
¡û
>W1610031261
AYYQ01000029
Bacillota
Apilactobacillus ozensis DSM 23829 = JCM 17196 [AYYQ]
41209
41284
+
Arg
ACG
[ENA]
¡û
>W1610032222
AYZL01000014
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [AYZL]
636
711
+
Arg
ACG
[ENA]
¡û
>W1610036152
AZFB01000028
Bacillota
Lactobacillus psittaci DSM 15354 [AZFB]
715
639
-
Arg
ACG
[ENA]
¡û
>W1610039458
AZNM01000001
Bacillota
Lactobacillus jensenii IM18-3 [AZNM]
600
675
+
Arg
ACG
[ENA]
¡û
>W1610039467
AZNM01000004
Bacillota
Lactobacillus jensenii IM18-3 [AZNM]
2839
2914
+
Arg
ACG
[ENA]
¡û
>W1610039522
AZNN01000022
Bacillota
Lactobacillus jensenii IM18-1 [AZNN]
442
367
-
Arg
ACG
[ENA]
¡û
>W1610039531
AZNN01000027
Bacillota
Lactobacillus jensenii IM18-1 [AZNN]
5001
4926
-
Arg
ACG
[ENA]
¡û
>W1610039558
AZNO01000003
Bacillota
Lactobacillus jensenii IM11 [AZNO]
598
673
+
Arg
ACG
[ENA]
¡û
>W1610039566
AZNO01000005
Bacillota
Lactobacillus jensenii IM11 [AZNO]
16743
16818
+
Arg
ACG
[ENA]
¡û
>W1610039636
AZRC01000026
Bacillota
Lactobacillus jensenii IM59 [AZRC]
624
699
+
Arg
ACG
[ENA]
¡û
>W1610039659
AZRC01000034
Bacillota
Lactobacillus jensenii IM59 [AZRC]
4948
4873
-
Arg
ACG
[ENA]
¡û
>W1610039685
AZRD01000013
Bacillota
Lactobacillus jensenii IM1 [AZRD]
43011
43086
+
Arg
ACG
[ENA]
¡û
>W1610039699
AZRD01000052
Bacillota
Lactobacillus jensenii IM1 [AZRD]
487
562
+
Arg
ACG
[ENA]
¡û
>W1610039733
AZRE01000012
Bacillota
Lactobacillus jensenii IM3 [AZRE]
4906
4831
-
Arg
ACG
[ENA]
¡û
>W1610039740
AZRE01000035
Bacillota
Lactobacillus jensenii IM3 [AZRE]
494
569
+
Arg
ACG
[ENA]
¡û
>W1610044870
BBAW01000018
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [BBAW]
580
655
+
Arg
ACG
[ENA]
¡û
>W1610529467
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
90736
90811
+
Arg
ACG
[ENA]
¡û
>W1610774015
LNUM01000007
Bacillota
Pediococcus acidilactici [LNUM]
9113
9038
-
Arg
ACG
[ENA]
¡û
>W1610856289
LQNR01000048
Bacillota
Pediococcus acidilactici [LQNR]
36102
36027
-
Arg
ACG
[ENA]
¡û
>W1610873392
LRBW01000017
Bacillota
Pediococcus acidilactici [LRBW]
60474
60399
-
Arg
ACG
[ENA]
¡û
>W1710028213
AYYQ01000029
Bacillota
Apilactobacillus ozensis DSM 23829 = JCM 17196 [AYYQ]
41209
41284
+
Arg
ACG
[ENA]
¡û
>W1710029149
AYZL01000014
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [AYZL]
636
711
+
Arg
ACG
[ENA]
¡û
>W1710033191
AZFB01000028
Bacillota
Lactobacillus psittaci DSM 15354 [AZFB]
715
639
-
Arg
ACG
[ENA]
¡û
>W1710036603
AZNM01000001
Bacillota
Lactobacillus jensenii IM18-3 [AZNM]
600
675
+
Arg
ACG
[ENA]
¡û
>W1710036612
AZNM01000004
Bacillota
Lactobacillus jensenii IM18-3 [AZNM]
2839
2914
+
Arg
ACG
[ENA]
¡û
>W1710036667
AZNN01000022
Bacillota
Lactobacillus jensenii IM18-1 [AZNN]
442
367
-
Arg
ACG
[ENA]
¡û
>W1710036676
AZNN01000027
Bacillota
Lactobacillus jensenii IM18-1 [AZNN]
5001
4926
-
Arg
ACG
[ENA]
¡û
>W1710036703
AZNO01000003
Bacillota
Lactobacillus jensenii IM11 [AZNO]
598
673
+
Arg
ACG
[ENA]
¡û
>W1710036711
AZNO01000005
Bacillota
Lactobacillus jensenii IM11 [AZNO]
16743
16818
+
Arg
ACG
[ENA]
¡û
>W1710036781
AZRC01000026
Bacillota
Lactobacillus jensenii IM59 [AZRC]
624
699
+
Arg
ACG
[ENA]
¡û
>W1710036804
AZRC01000034
Bacillota
Lactobacillus jensenii IM59 [AZRC]
4948
4873
-
Arg
ACG
[ENA]
¡û
>W1710036830
AZRD01000013
Bacillota
Lactobacillus jensenii IM1 [AZRD]
43011
43086
+
Arg
ACG
[ENA]
¡û
>W1710036844
AZRD01000052
Bacillota
Lactobacillus jensenii IM1 [AZRD]
487
562
+
Arg
ACG
[ENA]
¡û
>W1710036878
AZRE01000012
Bacillota
Lactobacillus jensenii IM3 [AZRE]
4906
4831
-
Arg
ACG
[ENA]
¡û
>W1710036885
AZRE01000035
Bacillota
Lactobacillus jensenii IM3 [AZRE]
494
569
+
Arg
ACG
[ENA]
¡û
>W1710041968
BBAW01000018
Bacillota
Holzapfeliella floricola DSM 23037 = JCM 16512 [BBAW]
580
655
+
Arg
ACG
[ENA]
¡û
>W1710631057
JQCC01000003
Bacillota
Pediococcus acidilactici [JQCC]
90736
90811
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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