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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200194 (34 seq.)
>W1710776041
LIZH01001293
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
800
724
-
Gln
TTG
[ENA]
¡û
>W1710890906
LNCE01000035
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
46155
46231
+
Gln
TTG
[ENA]
¡û
>W1711033735
LRIB01000054
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
65580
65656
+
Gln
TTG
[ENA]
¡û
>W1711149111
LVLE01000025
Betaproteobacteria
Polynucleobacter asymbioticus [LVLE]
674080
674156
+
Gln
TTG
[ENA]
¡û
>W1711421582
MHZG01000001
Betaproteobacteria
Polynucleobacter sp. GWA2_45_21 [MHZG]
579535
579611
+
Gln
TTG
[ENA]
¡û
>W1712004463
NEGX01000018
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
33367
33291
-
Gln
TTG
[ENA]
¡û
>W1712077054
NGUP01000003
Betaproteobacteria
Polynucleobacter campilacus MWH-Feld-100 [NGUP]
438368
438444
+
Gln
TTG
[ENA]
¡û
>C171035121
CP015016
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKolB [CP015016]
2166415
2166491
+
Gln
TTG
-
¡û
>C171035159
CP015017
Betaproteobacteria
Polynucleobacter asymbioticus MWH-RechtKol4 [CP015017]
2183868
2183944
+
Gln
TTG
-
¡û
>C171094962
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
794392
794468
+
Gln
TTG
-
¡û
>W131220813
ATZV01000056
Betaproteobacteria
beta proteobacterium SCGC AAA027-C02 [ATZV]
14394
14470
+
Gln
TTG
[ENA]
¡û
>C011129
CP000269
Betaproteobacteria
Janthinobacterium sp. Marseille [CP000269]
3500194
3500270
+
Gln
TTG
[Ensembl]
¡û
>C017388
CP000655
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [CP000655]
1999091
1999167
+
Gln
TTG
[Ensembl]
¡û
>WENV180029870
FTJL01010855
[FTJL] metagenome; soil
624
700
+
Gln
TTG
[ENA]
¢þ
>WENV180040736
LLBZ010009814
[LLBZ] soil metagenome; soil from tomato rhizosphere
570
646
+
Gln
TTG
[ENA]
¢þ
>WENV181323680
OFKY01034805
[OFKY] marine metagenome; sea ice
370
294
-
Gln
TTG
[ENA]
¢þ
>WENV170616340
FUWD012885483
[FUWD] metagenome; unknown
727
803
+
Gln
TTG
[ENA]
¢þ
>C181078392
CP023276
Betaproteobacteria
Polynucleobacter difficilis AM-8B5 [CP023276]
1844370
1844446
+
Gln
TTG
-
¡û
>C191098095
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
82304
82380
+
Gln
TTG
-
¡û
>W09106290
AAUC01000006
Betaproteobacteria
Polynucleobacter asymbioticus QLW-P1DMWA-1 [AAUC]
37615
37691
+
Gln
TTG
[ENA]
¡û
>W09107519
ABJA01000001
Betaproteobacteria
Polynucleobacter necessarius STIR1 [ABJA]
165989
165913
-
Gln
TTG
[ENA]
¡û
>W1911199870
NRDQ01000059
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
22925
23001
+
Gln
TTG
[ENA]
¡û
>W1810068410
PDZL01000007
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
66352
66428
+
Gln
TTG
[ENA]
¡û
>W1810297215
PTLZ01000001
Betaproteobacteria
Herminiimonas fonticola S-94 [PTLZ]
667633
667557
-
Gln
TTG
[ENA]
¡û
>W1810699171
QMCH01000001
Betaproteobacteria
Polynucleobacter paneuropaeus FUKU-NW-11 [QMCH]
82296
82372
+
Gln
TTG
[ENA]
¡û
>C11105100
CP002745
Betaproteobacteria
Collimonas fungivorans Ter331 [CP002745]
714965
714889
-
Gln
TTG
[Ensembl]
¡û
>W11143206
AEPR01000103
Betaproteobacteria
Oxalobacteraceae bacterium IMCC9480 [AEPR]
486
410
-
Gln
TTG
[ENA]
¡û
>W1610070487
BCTH01000056
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
8124
8048
-
Gln
TTG
[ENA]
¡û
>W1610640147
LIZH01001293
Betaproteobacteria
Duganella sp. Ant L27C-9 [LIZH]
800
724
-
Gln
TTG
[ENA]
¡û
>W1610751302
LNCE01000035
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
46155
46231
+
Gln
TTG
[ENA]
¡û
>W1710067860
BCTH01000056
Betaproteobacteria
Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 [BCTH]
8124
8048
-
Gln
TTG
[ENA]
¡û
>W1710509380
FMXD01000009
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
139724
139648
-
Gln
TTG
[ENA]
¡û
>W1710522232
FNHA01000015
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
65971
66047
+
Gln
TTG
[ENA]
¡û
>W1710530363
FNOR01000009
Betaproteobacteria
Collimonas sp. OK242 [FNOR]
53628
53704
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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