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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200241 (27 seq.)
>W1710943644
LOPX01000014
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
331578
331654
+
Asp
GTC
[ENA]
¡û
>W1711029600
LRFH01000014
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
331578
331654
+
Asp
GTC
[ENA]
¡û
>C015807
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
857126
857202
+
Asp
GTC
[Ensembl]
¡û
>C015814
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1902440
1902516
+
Asp
GTC
[Ensembl]
¡û
>C015970
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
825361
825437
+
Asp
GTC
[Ensembl]
¡û
>C015976
CP000323
Gammaproteobacteria
Psychrobacter cryohalolentis K5 [CP000323]
2148273
2148349
+
Asp
GTC
[Ensembl]
¡û
>WENV180980003
ODVC01038523
[ODVC] human metagenome; G_DNA_Attached/Keratinized gingiva
91
167
+
Asp
GTC
[ENA]
¢þ
>WENV181119935
OEFJ01000630
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
10699
10775
+
Asp
GTC
[ENA]
¢þ
>WENV181120170
OEFJ01008804
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
284
360
+
Asp
GTC
[ENA]
¢þ
>W141200497
AYXZ01000022
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
62761
62837
+
Asp
GTC
[ENA]
¡û
>W141200502
AYXZ01000027
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
81
5
-
Asp
GTC
[ENA]
¡û
>W141200536
AYXZ01000139
Gammaproteobacteria
Psychrobacter sp. TB47 [AYXZ]
12337
12261
-
Asp
GTC
[ENA]
¡û
>C08007204
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
857126
857202
+
Asp
GTC
[Ensembl]
¡û
>C08007211
CP000082
Gammaproteobacteria
Psychrobacter arcticus 273-4 [CP000082]
1902440
1902516
+
Asp
GTC
[Ensembl]
¡û
>WENV170014702
AYSL01005863
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
532
608
+
Asp
GTC
[ENA]
¢þ
>WENV170014719
AYSL01006707
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
576
500
-
Asp
GTC
[ENA]
¢þ
>WENV170014762
AYSL01009560
[AYSL] marine sediment metagenome; marine sediment samples in the proximity of a phosphate-oil terminal
4195
4119
-
Asp
GTC
[ENA]
¢þ
>W141462354
JFHS01000002
Gammaproteobacteria
Halopseudomonas bauzanensis [JFHS]
240570
240494
-
Asp
GTC
[ENA]
¡û
>W141462366
JFHS01000005
Gammaproteobacteria
Halopseudomonas bauzanensis [JFHS]
187166
187090
-
Asp
GTC
[ENA]
¡û
>W1511310750
JPQO01000046
Gammaproteobacteria
Acinetobacter sp. HR7 [JPQO]
30387
30311
-
Asp
GTC
[ENA]
¡û
>W1511310751
JPQO01000046
Gammaproteobacteria
Acinetobacter sp. HR7 [JPQO]
30261
30185
-
Asp
GTC
[ENA]
¡û
>W1511310753
JPQO01000046
Gammaproteobacteria
Acinetobacter sp. HR7 [JPQO]
30074
29998
-
Asp
GTC
[ENA]
¡û
>W1511310755
JPQO01000046
Gammaproteobacteria
Acinetobacter sp. HR7 [JPQO]
29867
29791
-
Asp
GTC
[ENA]
¡û
>W121043505
AHVZ01000017
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
249604
249680
+
Asp
GTC
[ENA]
¡û
>W121043517
AHVZ01000023
Gammaproteobacteria
Psychrobacter sp. PAMC 21119 [AHVZ]
18118
18194
+
Asp
GTC
[ENA]
¡û
>W1610799944
LOPX01000014
Gammaproteobacteria
Guyparkeria sp. XI15 XI15 [LOPX]
331578
331654
+
Asp
GTC
[ENA]
¡û
>W1610877868
LRFH01000014
Gammaproteobacteria
Guyparkeria sp. WRN-7 WRN-7 [LRFH]
331578
331654
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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