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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200290 (19 seq.)
>W1711705105
MSQD01000007
Bacillota
Thermoanaerobacterium sp. PSU-2 [MSQD]
96304
96378
+
Met
CAT
[ENA]
¡û
>W131218771
ATXZ01000014
Bacillota
Caldanaerobius polysaccharolyticus DSM 13641 [ATXZ]
6281
6208
-
Met
CAT
[ENA]
¡û
>C025837
AE008691
Bacillota
Caldanaerobacter subterraneus subsp. tengcongensis MB4 [AE008691]
2324558
2324634
+
Met
CAT
[Ensembl]
¡û
>W141153116
AXDC01000004
Bacillota
Caldanaerobacter subterraneus subsp. yonseiensis KB-1 [AXDC]
7879
7955
+
Met
CAT
[ENA]
¡û
>W141193964
AYSN01000029
Bacillota
Thermoanaerobacterium aotearoense SCUT27 [AYSN]
93357
93431
+
Met
CAT
[ENA]
¡û
>W141238326
BBKT01000005
Bacillota
Thermoanaerobacterium saccharolyticum [BBKT]
55352
55426
+
Met
CAT
[ENA]
¡û
>WENV170676232
LDZR01001822
[LDZR] terrestrial metagenome; oil reservoir sample K2
323
399
+
Met
CAT
[ENA]
¢þ
>C181021900
CP016893
Bacillota
Thermoanaerobacterium thermosaccharolyticum TG57 [CP016893]
1425810
1425886
+
Met
CAT
-
¡û
>W09112144
ABXP01000108
Bacillota
Caldanaerobacter subterraneus DSM 12653 [ABXP]
50946
51022
+
Met
CAT
[ENA]
¡û
>W09135020
ACVG01000058
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [ACVG]
6447
6521
+
Met
CAT
[ENA]
¡û
>W1910747699
MINB01000006
Bacillota
Thermoanaerobacterium thermosaccharolyticum GSU5 [MINB]
8550
8474
-
Met
CAT
[ENA]
¡û
>W1910976721
NKHD01000024
Bacillota
Thermoanaerobacterium thermosaccharolyticum M5 [NKHD]
11913
11837
-
Met
CAT
[ENA]
¡û
>C10113817
CP002171
Bacillota
Thermoanaerobacterium thermosaccharolyticum DSM 571 [CP002171]
269034
269108
+
Met
CAT
[Ensembl]
¡û
>C11123283
CP002739
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [CP002739]
246244
246320
+
Met
CAT
[Ensembl]
¡û
>W11150440
AEVQ01000006
Bacillota
Thermoanaerobacterium xylanolyticum LX-11 [AEVQ]
44207
44283
+
Met
CAT
[ENA]
¡û
>C121007657
CP003184
Bacillota
Thermoanaerobacterium saccharolyticum JW/SL-YS485 [CP003184]
947141
947067
-
Met
CAT
[Ensembl]
¡û
>W1610612634
LGEY01000014
Bacillota
Caldanaerobacter subterraneus [LGEY]
323
399
+
Met
CAT
[ENA]
¡û
>W1710584075
FQVH01000005
Bacillota
Caldanaerobius fijiensis DSM 17918 [FQVH]
79579
79652
+
Met
CAT
[ENA]
¡û
>W1710733955
LGEY01000014
Bacillota
Caldanaerobacter subterraneus [LGEY]
323
399
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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