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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
1
, Akira Muto
6
, Yo Kikuchi
1
, Hachiro Inokuchi
1
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200290 (6 seq.)
>WENV000036
AACY020001224
Marine microbial communities from Global Ocean Sampling (GOS)
230
306
+
Asn
GTT
[ENA]
>WENV182545436
OJBN01002743
[OJBN] seawater metagenome; Sea water
1132
1205
+
Asn
GTT
[ENA]
¡û
>WENV182552063
OJCJ01004833
[OJCJ] seawater metagenome; Sea water
1599
1672
+
Asn
GTT
[ENA]
¡û
>WENV182556421
OJDG01007831
[OJDG] seawater metagenome; Sea water
203
130
-
Asn
GTT
[ENA]
¡û
>WENV182571173
OJFG01000915
[OJFG] seawater metagenome; Sea water
5533
5606
+
Asn
GTT
[ENA]
¡û
>WENV068539
AACY023730363
Marine microbial communities from Global Ocean Sampling (GOS)
596
520
-
Asn
GTT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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