This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200297 (55 seq.)
>W1711510637
MLBG01000072
Thermodesulfobacteriota
Desulfovibrio sp. DV [MLBG]
23430
23354
-
Pro
GGG
[ENA]
¡û
>W131222832
AUBP01000002
Thermodesulfobacteriota
Desulfovibrio inopinatus DSM 10711 [AUBP]
127137
127213
+
Pro
GGG
[ENA]
¡û
>W131215480
ATVA01000016
Thermodesulfobacteriota
Paucidesulfovibrio longus DSM 6739 [ATVA]
169839
169763
-
Pro
GGG
[ENA]
¡û
>W131208386
ATHI01000026
Thermodesulfobacteriota
Alkalidesulfovibrio alkalitolerans DSM 16529 [ATHI]
386133
386209
+
Pro
GGG
[ENA]
¡û
>W131208459
ATHV01000015
Thermodesulfobacteriota
Desulfovibrio sp. X2 [ATHV]
14066
14142
+
Pro
GGG
[ENA]
¡û
>WENV180014725
FQKF010114969
[FQKF] soil metagenome; Soil
35
111
+
Pro
GGG
[ENA]
¢þ
>WENV180043209
LQAH01010676
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
432
508
+
Pro
GGG
[ENA]
¢þ
>WENV180043222
LQAH01012407
[LQAH] bioreactor metagenome; bioreactor_4 inoculated with Wadden Sea sediment; 2nd replicate of a sulfate-reducing system that
786
710
-
Pro
GGG
[ENA]
¢þ
>WENV180276513
OBHU01032653
[OBHU] human gut metagenome; feces
324
400
+
Pro
GGG
[ENA]
¢þ
>W141027980
ALAO01000072
Thermodesulfobacteriota
Solidesulfovibrio magneticus str. Maddingley MBC34 [ALAO]
6300
6224
-
Pro
GGG
[ENA]
¡û
>WENV181258045
OFFU01027215
[OFFU] mouse gut metagenome; faeces
848
924
+
Pro
GGG
[ENA]
¢þ
>WENV181261538
OFFX01080610
[OFFX] mouse gut metagenome; faeces
201
125
-
Pro
GGG
[ENA]
¢þ
>WENV181263579
OFFZ01005960
[OFFZ] mouse gut metagenome; faeces
228
152
-
Pro
GGG
[ENA]
¢þ
>WENV181909070
OGYB01008982
[OGYB] human gut metagenome; faeces
1621
1545
-
Pro
GGG
[ENA]
¢þ
>W141201075
AZAO01000006
Thermodesulfobacteriota
Nitratidesulfovibrio termitidis HI1 [AZAO]
1326290
1326366
+
Pro
GGG
[ENA]
¡û
>WENV182664889
OJMP01033557
[OJMP] human gut metagenome; feces
437
361
-
Pro
GGG
[ENA]
¢þ
>WENV182693731
OJOH01004132
[OJOH] human gut metagenome; stool sample
1288
1364
+
Pro
GGG
[ENA]
¢þ
>W141278213
JAFE01000003
Thermodesulfobacteriota
Desulfonatronum lacustre DSM 10312 [JAFE]
257080
257156
+
Pro
GGG
[ENA]
¡û
>W141279147
JAGC01000003
Thermodesulfobacteriota
Solidesulfovibrio magneticus magneticus IFRC170 [JAGC]
17006
16930
-
Pro
GGG
[ENA]
¡û
>WENV183027660
OLFV01000224
[OLFV] human gut metagenome; faeces
47726
47650
-
Pro
GGG
[ENA]
¢þ
>WENV183512365
OMKS01000348
[OMKS] sediment metagenome; hot spring sediment
1439
1363
-
Pro
GGG
[ENA]
¢þ
>WENV183747129
PPCM01000243
[PPCM] marine sediment metagenome; marine sediment
15046
14970
-
Pro
GGG
[ENA]
¢þ
>WENV170418631
CEUM01056742
[CEUM] marine metagenome genome assembly TARA_123_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
189
113
-
Pro
GGG
[ENA]
¢þ
>WENV170438398
CEUU01114576
[CEUU] marine metagenome genome assembly TARA_122_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
5870
5794
-
Pro
GGG
[ENA]
¢þ
>WENV170439798
CEUV01052254
[CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
340
264
-
Pro
GGG
[ENA]
¢þ
>WENV170646463
JQGR01008834
[JQGR] bioreactor metagenome; continuous culture inoculated with microbial biomass from the upper 2 cm of a marine
300
224
-
Pro
GGG
[ENA]
¢þ
>WENV170656667
JTFO01032115
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
21
97
+
Pro
GGG
[ENA]
¢þ
>WENV170715169
LNQE01000139
[LNQE] hydrocarbon metagenome; hydrocarbon-contaminated ditch
3713
3789
+
Pro
GGG
[ENA]
¢þ
>WENV170896360
MDTD01094401
[MDTD] marine metagenome; seawater
11055
11131
+
Pro
GGG
[ENA]
¢þ
>C181226973
LT907975
Thermodesulfobacteriota
Pseudodesulfovibrio profundus 500-1 [LT907975]
671310
671386
+
Pro
GGG
-
¡û
>C191045068
CP026538
Thermodesulfobacteriota
Solidesulfovibrio carbinolicus DSM 3852 [CP026538]
3662316
3662240
-
Pro
GGG
-
¡û
>W09118001
ACCN01000005
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
203035
202959
-
Pro
GGG
[ENA]
¡û
>W09118003
ACCN01000005
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
202491
202415
-
Pro
GGG
[ENA]
¡û
>W09118024
ACCN01000009
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [ACCN]
77975
77899
-
Pro
GGG
[ENA]
¡û
>W141731358
JNJA01000012
Thermodesulfobacteriota
Solidesulfovibrio alcoholivorans DSM 5433 [JNJA]
117125
117201
+
Pro
GGG
[ENA]
¡û
>W141804602
JPIK01000022
Thermodesulfobacteriota
Desulfonatronum thiodismutans [JPIK]
45463
45539
+
Pro
GGG
[ENA]
¡û
>W1910020665
BDUJ01000002
Thermodesulfobacteriota
Nitratidesulfovibrio sp. HK-II HK-II [BDUJ]
935969
935893
-
Pro
GGG
[ENA]
¡û
>C09104092
AP010904
Thermodesulfobacteriota
Solidesulfovibrio magneticus RS-1 [AP010904]
987222
987298
+
Pro
GGG
[Ensembl]
¡û
>C09104208
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
2315144
2315220
+
Pro
GGG
[Ensembl]
¡û
>C09104227
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3528274
3528350
+
Pro
GGG
[Ensembl]
¡û
>C09104229
CP001649
Thermodesulfobacteriota
Maridesulfovibrio salexigens DSM 2638 [CP001649]
3528818
3528894
+
Pro
GGG
[Ensembl]
¡û
>C09104383
CP001197
Thermodesulfobacteriota
Nitratidesulfovibrio vulgaris [CP001197]
2298848
2298924
+
Pro
GGG
[Ensembl]
¡û
>W1810445574
PZKN01000028
Thermodesulfobacteriota
Desulfonatronum sp. SC1 [PZKN]
7030
6954
-
Pro
GGG
[ENA]
¡û
>W10112650
ADFE01000007
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
57391
57315
-
Pro
GGG
[ENA]
¡û
>W10126129
AECZ01000014
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
50428
50352
-
Pro
GGG
[ENA]
¡û
>W11115880
ADFE02000001
Thermodesulfobacteriota
Solidesulfovibrio carbinoliphilus FW1012B [ADFE]
1514995
1514919
-
Pro
GGG
[ENA]
¡û
>W1511365645
JSEH01000017
Thermodesulfobacteriota
Desulfovibrio sp. TomC [JSEH]
74602
74678
+
Pro
GGG
[ENA]
¡û
>W11133390
AECZ01000014
Thermodesulfobacteriota
Solidesulfovibrio fructosivorans JJ [AECZ]
50428
50352
-
Pro
GGG
[ENA]
¡û
>W1511534051
JYNO01000001
Thermodesulfobacteriota
Desulfonatronum thioautotrophicum ASO4-1 [JYNO]
629
553
-
Pro
GGG
[ENA]
¡û
>W11178825
AGFG01000042
Thermodesulfobacteriota
Desulfovibrio sp. A2 [AGFG]
86710
86786
+
Pro
GGG
[ENA]
¡û
>W1610046038
BBCB01000002
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
180471
180395
-
Pro
GGG
[ENA]
¡û
>W121036496
AHMC01000023
Thermodesulfobacteriota
Desulfovibrio sp. U5L [AHMC]
193857
193781
-
Pro
GGG
[ENA]
¡û
>W1710042834
BBCB01000002
Thermodesulfobacteriota
Salidesulfovibrio brasiliensis JCM 12178 [BBCB]
180471
180395
-
Pro
GGG
[ENA]
¡û
>W1710509938
FMXO01000021
Thermodesulfobacteriota
Desulfonatronum thiosulfatophilum [FMXO]
14086
14010
-
Pro
GGG
[ENA]
¡û
>W1710602317
FUYC01000018
Thermodesulfobacteriota
Paucidesulfovibrio gracilis DSM 16080 [FUYC]
41602
41678
+
Pro
GGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK