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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20037 (12 seq.)
>C171115812
CP021109
Betaproteobacteria
Bordetella genomosp. 9 AU17164 [CP021109]
1250442
1250352
-
Ser
CGA
-
¡û
>W131155699
AQOU01000021
Betaproteobacteria
Pandoraea sp. SD6-2 [AQOU]
100008
99918
-
Ser
CGA
[ENA]
¡û
>WENV180272317
OBEQ012367920
[OBEQ] groundwater metagenome; groundwater
342
252
-
Ser
CGA
[ENA]
¢þ
>W141091680
AUZF01000017
Betaproteobacteria
Pandoraea pnomenusa RB-44 [AUZF]
70884
70794
-
Ser
CGA
[ENA]
¡û
>WENV170961749
MLJW01000875
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
5479
5389
-
Ser
CGA
[ENA]
¢þ
>C181014177
CP014018
Betaproteobacteria
Pandoraea apista FDAARGOS_126 [CP014018]
2166685
2166775
+
Ser
CGA
-
¡û
>W1910730018
MHBT01000134
Betaproteobacteria
Methylophilales bacterium RIFCSPHIGHO2_02_FULL_57_10 [MHBT]
15444
15534
+
Ser
CGA
[ENA]
¡û
>W1910856319
NBTA01000014
Betaproteobacteria
Pandoraea apista Pa16226 [NBTA]
181228
181318
+
Ser
CGA
[ENA]
¡û
>W1810427557
PYYA01000011
Betaproteobacteria
Pandoraea apista Pa14367 [PYYA]
76316
76226
-
Ser
CGA
[ENA]
¡û
>C151053907
CP009553
Betaproteobacteria
Pandoraea pnomenusa DSM 16536 [CP009553]
4636014
4636104
+
Ser
CGA
-
¡û
>C151079022
CP011279
Betaproteobacteria
Pandoraea apista TF80G25 [CP011279]
5530644
5530554
-
Ser
CGA
[Ensembl]
¡û
>C161086524
CP015371
Betaproteobacteria
Pandoraea pnomenusa MCB032 [CP015371]
4014050
4014140
+
Ser
CGA
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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