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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200370 (27 seq.)
>W131175290
ARJD01000052
Bacteroidota
Polaribacter franzmannii ATCC 700399 [ARJD]
94783
94859
+
Met
CAT
[ENA]
¡û
>W131225328
AUDM01000003
Bacteroidota
Flavobacterium filum DSM 17961 [AUDM]
41414
41338
-
Met
CAT
[ENA]
¡û
>WENV181169638
OEIV010006015
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2753
2679
-
Ile2
CAT
[ENA]
¢þ
>WENV181223595
OFDC01042739
[OFDC] hot springs metagenome; Water
354
428
+
Ile2
CAT
[ENA]
¢þ
>WENV181837112
OGVK01002597
[OGVK] freshwater metagenome; freshwater
2688
2762
+
Ile2
CAT
[ENA]
¢þ
>WENV181840038
OGVO01033761
[OGVO] freshwater metagenome; freshwater
298
372
+
Ile2
CAT
[ENA]
¢þ
>W141289850
JARQ01000011
Bacteroidota
Chryseobacterium hispalense DSM 25574 [JARQ]
97175
97251
+
Met
CAT
[ENA]
¡û
>WENV183623195
OOFX01029281
[OOFX] marine metagenome; sea ice
199
125
-
Ile2
CAT
[ENA]
¢þ
>WENV183716692
PDWJ01000136
[PDWJ] oral metagenome; swab sample of gingival sulcus (mouth) from 5 year old male Dolphin_J
89410
89484
+
Ile2
CAT
[ENA]
¢þ
>WENV183729820
PJTR01000097
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
2437
2363
-
Ile2
CAT
[ENA]
¢þ
>WENV183731743
PJTT01000137
[PJTT] soil metagenome; Soil (2) enriched on wood chips
47670
47596
-
Ile2
CAT
[ENA]
¢þ
>WENV170219342
CEPZ01057464
[CEPZ] marine metagenome genome assembly TARA_039_MES_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
512985
513061
+
Met
CAT
[ENA]
¢þ
>WENV170325741
CEST01049304
[CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
179
105
-
Met
CAT
[ENA]
¢þ
>WENV170555170
CXWK01097162
[CXWK] wastewater metagenome; activated sludge
1620
1547
-
Met
CAT
[ENA]
¢þ
>WENV170608308
FUWD010915733
[FUWD] metagenome; unknown
442
516
+
Met
CAT
[ENA]
¢þ
>WENV170920598
MDTF01019030
[MDTF] marine metagenome; seawater
293
219
-
Met
CAT
[ENA]
¢þ
>C181074442
CP022986
Bacteroidota
Chryseobacterium camelliae Dolsongi-HT1 [CP022986]
3461000
3461074
+
Met
CAT
-
¡û
>C181196544
CP031188
Bacteroidota
Flavobacterium arcticum SM1502 [CP031188]
966829
966903
+
Met
CAT
-
¡û
>C191115191
CP033912
Bacteroidota
Chryseobacterium shandongense H5143 [CP033912]
1498868
1498794
-
Met
CAT
-
¡û
>C191115243
CP033914
Bacteroidota
Chryseobacterium shandongense G0239 [CP033914]
3648390
3648316
-
Met
CAT
-
¡û
>C191115316
CP033915
Bacteroidota
Chryseobacterium shandongense G0207 [CP033915]
1945865
1945791
-
Met
CAT
-
¡û
>C191161910
CP038810
Bacteroidota
Flavobacterium sangjuense GS03 [CP038810]
499927
499853
-
Met
CAT
-
¡û
>W1910577999
JUIX01000008
Bacteroidota
Flavobacterium dauae TCH3-2 [JUIX]
198
124
-
Met
CAT
[ENA]
¡û
>W1911701989
QNVW01000002
Bacteroidota
Chryseobacterium sp. 5_R23647 [QNVW]
398427
398501
+
Met
CAT
[ENA]
¡û
>W1810695877
QLSV01000003
Bacteroidota
Flavobacterium lacus CGMCC 1.12504 [QLSV]
260945
261019
+
Met
CAT
[ENA]
¡û
>W1710507361
FMVF01000007
Bacteroidota
Flavobacterium caeni [FMVF]
167569
167643
+
Met
CAT
[ENA]
¡û
>W1710584552
FQVQ01000003
Bacteroidota
Flavobacterium fontis [FQVQ]
138614
138688
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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