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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200465 (43 seq.)
>W131251480
CAVN010000068
Bacillota
Thermobrachium celere DSM 8682 [CAVN]
641
565
-
Ile
GAT
[ENA]
¡û
>W131251522
CAVN010000103
Bacillota
Thermobrachium celere DSM 8682 [CAVN]
307
231
-
Ile
GAT
[ENA]
¡û
>W131251542
CAVN010000123
Bacillota
Thermobrachium celere DSM 8682 [CAVN]
532
456
-
Ile
GAT
[ENA]
¡û
>W131196336
ASTF01000056
Bacillota
Lachnospiraceae bacterium 10-1 [ASTF]
258
334
+
Ile
GAT
[ENA]
¡û
>WENV180155306
OAUU01023735
[OAUU] human gut metagenome; faeces
247
171
-
Ile
GAT
[ENA]
¢þ
>WENV180679084
OCVV012166141
[OCVV] gut metagenome; gut
77
1
-
Ile
GAT
[ENA]
¢þ
>WENV180679086
OCVV012166141
[OCVV] gut metagenome; gut
77
1
-
Ile
GAT
[ENA]
¢þ
>WENV180681707
OCVV012793707
[OCVV] gut metagenome; gut
248
174
-
Ile
GAT
[ENA]
¢þ
>WENV180681708
OCVV012793707
[OCVV] gut metagenome; gut
248
174
-
Ile
GAT
[ENA]
¢þ
>W141067334
ASAA01000005
Bacillota
Acetivibrio clariflavus 4-2a [ASAA]
171290
171214
-
Ile
GAT
[ENA]
¡û
>WENV181198427
OERE01001340
[OERE] metagenome; Caecal content
1475
1401
-
Ile
GAT
[ENA]
¢þ
>WENV181231579
OFEK01038481
[OFEK] activated sludge metagenome; Anaerobic digester
72
148
+
Ile
GAT
[ENA]
¢þ
>WENV181728352
OGQA01046538
[OGQA] human gut metagenome; faeces
917
841
-
Ile
GAT
[ENA]
¢þ
>WENV182082736
OHGL01014948
[OHGL] human gut metagenome; feces
58
134
+
Ile
GAT
[ENA]
¢þ
>WENV182202785
OHPO01052169
[OHPO] human gut metagenome; feces
153
229
+
Ile
GAT
[ENA]
¢þ
>WENV182388278
OIEB01018058
[OIEB] human gut metagenome; feces
232
156
-
Ile
GAT
[ENA]
¢þ
>WENV182434641
OIIY01008099
[OIIY] human gut metagenome; human gut
61
137
+
Ile
GAT
[ENA]
¢þ
>WENV182444665
OIKT01001839
[OIKT] human gut metagenome; human gut
434
510
+
Ile
GAT
[ENA]
¢þ
>W141244568
CAKP01000035
Bacillota
Caloramator australicus RC3 [CAKP]
618
694
+
Ile
GAT
[ENA]
¡û
>WENV182715637
OJPI01006252
[OJPI] human gut metagenome; stool sample
2097
2021
-
Ile
GAT
[ENA]
¢þ
>WENV182734102
OJQE01002512
[OJQE] human gut metagenome; stool sample
3425
3349
-
Ile
GAT
[ENA]
¢þ
>WENV182993728
OLBA01000660
[OLBA] human gut metagenome; human gut
2590
2666
+
Ile
GAT
[ENA]
¢þ
>WENV183040131
OLGB01045832
[OLGB] human gut metagenome; faeces
917
841
-
Ile
GAT
[ENA]
¢þ
>WENV183064182
OLIH01001749
[OLIH] metagenome; faeces
3877
3801
-
Ile
GAT
[ENA]
¢þ
>WENV183085450
OLJF01004752
[OLJF] metagenome; faeces
2455
2531
+
Ile
GAT
[ENA]
¢þ
>WENV183488353
OMFY01018549
[OMFY] human gut metagenome; feces
915
839
-
Ile
GAT
[ENA]
¢þ
>WENV170006058
AMQJ01019457
[AMQJ] sediment metagenome; subsurface aquifer sediment
2093
2017
-
Ile
GAT
[ENA]
¢þ
>WENV170006745
AMWB02048908
[AMWB] bioreactor metagenome; anode biofilm in microbial fuel cells
2583
2507
-
Ile
GAT
[ENA]
¢þ
>WENV170636425
JFBN01250313
[JFBN] chicken gut metagenome; ceca of Broiler chicken
146
71
-
Ile
GAT
[ENA]
¢þ
>WENV170684476
LFRM01041399
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
909
833
-
Ile
GAT
[ENA]
¢þ
>WENV170685858
LFRM01112691
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
1374
1298
-
Ile
GAT
[ENA]
¢þ
>WENV170688605
LFRM01252642
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2156
2080
-
Ile
GAT
[ENA]
¢þ
>WENV170689168
LFRM01281286
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
2911
2835
-
Ile
GAT
[ENA]
¢þ
>WENV170717861
LSQX01052503
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
449
525
+
Ile
GAT
[ENA]
¢þ
>WENV170719865
LSQX01131711
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
874
950
+
Ile
GAT
[ENA]
¢þ
>C181114049
CP025197
Bacillota
Acetivibrio saccincola GGR1 [CP025197]
2631943
2631867
-
Ile
GAT
-
¡û
>C191174939
CP040093
Bacillota
Caloramator sp. E03 [CP040093]
1776110
1776186
+
Ile
GAT
-
¡û
>C191189869
LR026983
Bacillota
Maliibacterium massiliense Marseille-P3954 [LR026983]
1484927
1485003
+
Ile
GAT
-
¡û
>C121005057
CP003065
Bacillota
Acetivibrio clariflavus DSM 19732 [CP003065]
4516278
4516202
-
Ile
GAT
[Ensembl]
¡û
>C161076034
CP014672
Bacillota
Thermoclostridium stercorarium subsp. thermolacticum DSM 2910 [CP014672]
3022880
3022804
-
Ile
GAT
[Ensembl]
¡û
>C161076082
CP014673
Bacillota
Thermoclostridium stercorarium subsp. leptospartum DSM 9219 [CP014673]
3135614
3135538
-
Ile
GAT
[Ensembl]
¡û
>C131011050
CP003992
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP003992]
2957256
2957180
-
Ile
GAT
-
¡û
>C131011916
CP004044
Bacillota
Thermoclostridium stercorarium subsp. stercorarium DSM 8532 [CP004044]
2961519
2961443
-
Ile
GAT
-
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK