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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200471 (61 seq.)
>W1711010426
LQRH01000067
Bacillota
Streptococcus sp. DD13 [LQRH]
540
613
+
Arg
ACG
[ENA]
¡û
>W131087085
AOCE01000265
Bacillota
Streptococcus sobrinus DSM 20742 = ATCC 33478 [AOCE]
190
263
+
Arg
ACG
[ENA]
¡û
>W1711489280
MKIQ01000031
Bacillota
Floricoccus penangensis HibF3 [MKIQ]
163647
163574
-
Arg
ACG
[ENA]
¡û
>W1711489301
MKIR01000011
Bacillota
Floricoccus tropicus DF1 [MKIR]
171
98
-
Arg
ACG
[ENA]
¡û
>W131166230
ARCH01000013
Bacillota
Streptococcus ovis DSM 16829 [ARCH]
818
891
+
Arg
ACG
[ENA]
¡û
>W131166242
ARCH01000015
Bacillota
Streptococcus ovis DSM 16829 [ARCH]
55101
55028
-
Arg
ACG
[ENA]
¡û
>WENV180340720
OBLI01040276
[OBLI] pig gut metagenome; faeces
1392
1319
-
Arg
ACG
[ENA]
¢þ
>WENV180597982
OCPL01112353
[OCPL] human gut metagenome; ENVO:feces
53
126
+
Arg
ACG
[ENA]
¢þ
>W141145885
AWVA01000126
Bacillota
Streptococcus sobrinus W1703 [AWVA]
192
265
+
Arg
ACG
[ENA]
¡û
>WENV181891575
OGXO01038789
[OGXO] human gut metagenome; faeces
764
691
-
Arg
ACG
[ENA]
¢þ
>C181179337
CP029490
Bacillota
Streptococcus sobrinus SL1 [CP029490]
24766
24839
+
Arg
ACG
-
¡û
>C181179379
CP029490
Bacillota
Streptococcus sobrinus SL1 [CP029490]
1812889
1812816
-
Arg
ACG
-
¡û
>C181179404
CP029491
Bacillota
Streptococcus sobrinus 10919 [CP029491]
24706
24779
+
Arg
ACG
-
¡û
>C181179451
CP029491
Bacillota
Streptococcus sobrinus 10919 [CP029491]
1801504
1801431
-
Arg
ACG
-
¡û
>C181180408
CP029559
Bacillota
Streptococcus sobrinus NIDR 6715-15 [CP029559]
24794
24867
+
Arg
ACG
-
¡û
>C181180451
CP029559
Bacillota
Streptococcus sobrinus NIDR 6715-15 [CP029559]
1807881
1807808
-
Arg
ACG
-
¡û
>C181180471
CP029560
Bacillota
Streptococcus sobrinus NIDR 6715-7 [CP029560]
24794
24867
+
Arg
ACG
-
¡û
>C181180514
CP029560
Bacillota
Streptococcus sobrinus NIDR 6715-7 [CP029560]
1807882
1807809
-
Arg
ACG
-
¡û
>C181209596
LS483378
Bacillota
Streptococcus sobrinus NCTC12279 [LS483378]
24778
24851
+
Arg
ACG
-
¡û
>C181209638
LS483378
Bacillota
Streptococcus sobrinus NCTC12279 [LS483378]
1812977
1812904
-
Arg
ACG
-
¡û
>C181209797
LS483381
Bacillota
Streptococcus sobrinus NCTC10921 [LS483381]
24806
24879
+
Arg
ACG
-
¡û
>C181209840
LS483381
Bacillota
Streptococcus sobrinus NCTC10921 [LS483381]
1807952
1807879
-
Arg
ACG
-
¡û
>W1911162467
NPOU01000001
Bacillota
Streptococcus sobrinus KCOM 1157 [NPOU]
1776549
1776476
-
Arg
ACG
[ENA]
¡û
>W1911162497
NPOU01000003
Bacillota
Streptococcus sobrinus KCOM 1157 [NPOU]
48265
48192
-
Arg
ACG
[ENA]
¡û
>W11139889
AEKN01000011
Bacillota
Streptococcus downei F0415 [AEKN]
500
427
-
Arg
ACG
[ENA]
¡û
>W11139898
AEKN01000017
Bacillota
Streptococcus downei F0415 [AEKN]
31530
31457
-
Arg
ACG
[ENA]
¡û
>W11149554
AEUV01000001
Bacillota
Streptococcus criceti HS-6 [AEUV]
230099
230172
+
Arg
ACG
[ENA]
¡û
>W11149585
AEUV01000014
Bacillota
Streptococcus criceti HS-6 [AEUV]
57788
57712
-
Arg
ACG
[ENA]
¡û
>W11149643
AEUW01000005
Bacillota
Streptococcus macacae NCTC 11558 [AEUW]
188360
188287
-
Arg
ACG
[ENA]
¡û
>W11149658
AEUW01000010
Bacillota
Streptococcus macacae NCTC 11558 [AEUW]
30715
30642
-
Arg
ACG
[ENA]
¡û
>W11179143
AGGB01000399
Bacillota
Streptococcus sobrinus TCI-9 [AGGB]
351
278
-
Arg
ACG
[ENA]
¡û
>W11179199
AGGD01000449
Bacillota
Streptococcus sobrinus TCI-16 [AGGD]
66
139
+
Arg
ACG
[ENA]
¡û
>W11179219
AGGE01000345
Bacillota
Streptococcus sobrinus TCI-28 [AGGE]
154
81
-
Arg
ACG
[ENA]
¡û
>W11179300
AGGH01000362
Bacillota
Streptococcus sobrinus TCI-54 [AGGH]
158
231
+
Arg
ACG
[ENA]
¡û
>W11179366
AGGJ01000323
Bacillota
Streptococcus sobrinus TCI-61 [AGGJ]
81
154
+
Arg
ACG
[ENA]
¡û
>W11179421
AGGL01000211
Bacillota
Streptococcus sobrinus TCI-79 [AGGL]
160
233
+
Arg
ACG
[ENA]
¡û
>W11179444
AGGM01000263
Bacillota
Streptococcus sobrinus TCI-80 [AGGM]
1619
1546
-
Arg
ACG
[ENA]
¡û
>W11179487
AGGN01000306
Bacillota
Streptococcus sobrinus TCI-89 [AGGN]
160
233
+
Arg
ACG
[ENA]
¡û
>W11179515
AGGO01000341
Bacillota
Streptococcus sobrinus TCI-98 [AGGO]
155
82
-
Arg
ACG
[ENA]
¡û
>W11179567
AGGQ01000356
Bacillota
Streptococcus sobrinus TCI-119 [AGGQ]
348
275
-
Arg
ACG
[ENA]
¡û
>W11179594
AGGR01001203
Bacillota
Streptococcus sobrinus TCI-121 [AGGR]
160
233
+
Arg
ACG
[ENA]
¡û
>W11179644
AGGS01000237
Bacillota
Streptococcus sobrinus TCI-124 [AGGS]
160
233
+
Arg
ACG
[ENA]
¡û
>W11179802
AGGY01000195
Bacillota
Streptococcus sobrinus TCI-355 [AGGY]
160
233
+
Arg
ACG
[ENA]
¡û
>W11179863
AGHA01000338
Bacillota
Streptococcus sobrinus TCI-363 [AGHA]
153
80
-
Arg
ACG
[ENA]
¡û
>W11179896
AGHB01000286
Bacillota
Streptococcus sobrinus TCI-366 [AGHB]
160
233
+
Arg
ACG
[ENA]
¡û
>W11179921
AGHC01000287
Bacillota
Streptococcus sobrinus TCI-367 [AGHC]
351
278
-
Arg
ACG
[ENA]
¡û
>W11179977
AGHE01000428
Bacillota
Streptococcus sobrinus TCI-374 [AGHE]
346
273
-
Arg
ACG
[ENA]
¡û
>W11180038
AGHG01000355
Bacillota
Streptococcus sobrinus TCI-377 [AGHG]
345
272
-
Arg
ACG
[ENA]
¡û
>W11180061
AGHH01000347
Bacillota
Streptococcus sobrinus TCI-381 [AGHH]
149
222
+
Arg
ACG
[ENA]
¡û
>W11180093
AGHI01000182
Bacillota
Streptococcus sobrinus TCI-384 [AGHI]
155
82
-
Arg
ACG
[ENA]
¡û
>W11180151
AGHK01000350
Bacillota
Streptococcus sobrinus TCI-395 [AGHK]
160
233
+
Arg
ACG
[ENA]
¡û
>W11180174
AGHL01000285
Bacillota
Streptococcus sobrinus TCI-396 [AGHL]
155
82
-
Arg
ACG
[ENA]
¡û
>W11180201
AGHM01000367
Bacillota
Streptococcus sobrinus TCI-2 [AGHM]
155
82
-
Arg
ACG
[ENA]
¡û
>W11180267
AGHO01003754
Bacillota
Streptococcus sobrinus TCI-157 [AGHO]
190
117
-
Arg
ACG
[ENA]
¡û
>W11180303
AGHP01000322
Bacillota
Streptococcus sobrinus TCI-160 [AGHP]
352
279
-
Arg
ACG
[ENA]
¡û
>W11180328
AGHQ01000361
Bacillota
Streptococcus sobrinus TCI-172 [AGHQ]
160
233
+
Arg
ACG
[ENA]
¡û
>W11180360
AGHR01000627
Bacillota
Streptococcus sobrinus TCI-175 [AGHR]
160
233
+
Arg
ACG
[ENA]
¡û
>W11180387
AGHS01000786
Bacillota
Streptococcus sobrinus TCI-194 [AGHS]
155
82
-
Arg
ACG
[ENA]
¡û
>W11180442
AGHU01000274
Bacillota
Streptococcus sobrinus TCI-215 [AGHU]
160
233
+
Arg
ACG
[ENA]
¡û
>W11180472
AGHV01003853
Bacillota
Streptococcus sobrinus TCI-336 [AGHV]
107
34
-
Arg
ACG
[ENA]
¡û
>W1610858946
LQRH01000067
Bacillota
Streptococcus sp. DD13 [LQRH]
540
613
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK