This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200473 (111 seq.)
>W1711005203
LQNF01000043
Bacillota
Oceanobacillus damuensis [LQNF]
22332
22256
-
Met
CAT
[ENA]
¡û
>W1711078581
LSNA01000005
Bacillota
Oceanobacillus sp. E9 [LSNA]
403076
403152
+
Met
CAT
[ENA]
¡û
>W1711234546
LYCS01000002
Bacillota
Oceanobacillus sp. Castelsardo [LYCS]
531861
531786
-
Met
CAT
[ENA]
¡û
>W1711234634
LYCS01000015
Bacillota
Oceanobacillus sp. Castelsardo [LYCS]
1265
1189
-
Met
CAT
[ENA]
¡û
>W1711965217
NCVR01000005
Bacillota
Eggerthia catenaformis [NCVR]
97570
97646
+
Met
CAT
[ENA]
¡û
>W131087729
AOCX01000015
Bacillota
Oceanobacillus kimchii X50 [AOCX]
797585
797509
-
Met
CAT
[ENA]
¡û
>W131235137
AULI01000012
Bacillota
Pontibacillus halophilus DSM 19796 [AULI]
7525
7601
+
Met
CAT
[ENA]
¡û
>W131000423
AGEJ01000024
Bacillota
Eggerthia catenaformis OT 569 = DSM 20559 [AGEJ]
57369
57293
-
Met
CAT
[ENA]
¡û
>W131228907
AUGJ01000007
Bacillota
Eggerthia catenaformis OT 569 = DSM 20559 [AUGJ]
116088
116012
-
Met
CAT
[ENA]
¡û
>C015455
BA000028
Bacillota
Oceanobacillus iheyensis HTE831 [BA000028]
1959779
1959703
-
Met
CAT
[Ensembl]
¡û
>C171067334
CP017762
Bacillota
Virgibacillus sp. 6R [CP017762]
189979
189903
-
Met
CAT
-
¡û
>C171070701
CP017962
Bacillota
Virgibacillus halodenitrificans PDB-F2 [CP017962]
1687617
1687693
+
Met
CAT
-
¡û
>W141029001
ALEF01000048
Bacillota
Virgibacillus halodenitrificans 1806 [ALEF]
35690
35614
-
Met
CAT
[ENA]
¡û
>WENV180681922
OCVV012814384
[OCVV] gut metagenome; gut
174
98
-
Ile2
CAT
[ENA]
¢þ
>WENV180681925
OCVV012814384
[OCVV] gut metagenome; gut
174
98
-
Ile2
CAT
[ENA]
¢þ
>W141083676
AUQA01000006
Bacillota
Virgibacillus sp. CM-4 [AUQA]
307851
307927
+
Met
CAT
[ENA]
¡û
>W141093269
AVBB01000091
Bacillota
Priestia megaterium MSP20.1 [AVBB]
21881
21805
-
Met
CAT
[ENA]
¡û
>W141168958
AXVK01000015
Bacillota
Paucisalibacillus globulus DSM 18846 [AXVK]
12189
12113
-
Met
CAT
[ENA]
¡û
>W141259242
CBYO010000014
Bacillota
Paucisalibacillus sp. EB02 [CBYO]
206213
206137
-
Met
CAT
[ENA]
¡û
>W141261627
CCAX010000001
Bacillota
Oceanobacillus picturae [CCAX]
319004
319080
+
Met
CAT
[ENA]
¡û
>W141263713
CCDL010000002
Bacillota
Oceanobacillus manasiensis [CCDL]
298643
298719
+
Met
CAT
[ENA]
¡û
>W141263800
CCDM010000009
Bacillota
Oceanobacillus jeddahense S5 [CCDM]
48038
48114
+
Met
CAT
[ENA]
¡û
>W141263882
CCDO010000005
Bacillota
Virgibacillus halodenitrificans [CCDO]
193011
193087
+
Met
CAT
[ENA]
¡û
>W141263919
CCDP010000001
Bacillota
Virgibacillus massiliensis Vm-5 [CCDP]
1992607
1992683
+
Met
CAT
[ENA]
¡û
>C181031692
CP018622
Bacillota
Virgibacillus dokdonensis 21D [CP018622]
3477299
3477375
+
Met
CAT
-
¡û
>C181044099
CP020357
Bacillota
Oceanobacillus iheyensis CHQ24 [CP020357]
1996858
1996782
-
Met
CAT
-
¡û
>C181106530
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
911032
911106
+
Met
CAT
-
¡û
>C181106577
CP024848
Bacillota
Oceanobacillus zhaokaii 160 [CP024848]
2214346
2214270
-
Met
CAT
-
¡û
>C181110827
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
910081
910155
+
Met
CAT
-
¡û
>C181110874
CP025019
Bacillota
Oceanobacillus sp. 143 [CP025019]
2210337
2210261
-
Met
CAT
-
¡û
>C191098907
CP033046
Bacillota
Virgibacillus sp. Bac332 [CP033046]
3590609
3590533
-
Met
CAT
-
¡û
>C191098917
CP033048
Bacillota
Virgibacillus sp. Bac330 [CP033048]
1550302
1550378
+
Met
CAT
-
¡û
>C191099035
CP033049
Bacillota
Virgibacillus halodenitrificans Bac324 [CP033049]
1265396
1265320
-
Met
CAT
-
¡û
>W1910371430
FUFM01000023
Bacillota
Virgibacillus pantothenticus Marseille-P1102 [FUFM]
392173
392249
+
Met
CAT
[ENA]
¡û
>W1910371508
FUFN01000010
Bacillota
Virgibacillus proomii V-P [FUFN]
2210644
2210568
-
Met
CAT
[ENA]
¡û
>W1910371548
FUFO01000011
Bacillota
Oceanobacillus kimchii Marseille-P19319 [FUFO]
1042950
1042874
-
Met
CAT
[ENA]
¡û
>W1910371627
FUFQ01000018
Bacillota
Oceanobacillus sojae SK-2 [FUFQ]
58433
58509
+
Met
CAT
[ENA]
¡û
>W1910371897
FUFU01000019
Bacillota
Terribacillus halophilus T-h1 [FUFU]
125510
125586
+
Met
CAT
[ENA]
¡û
>W1910373739
FUHR01000007
Bacillota
Virgibacillus halodenitrificans Marseille-P736 [FUHR]
299864
299940
+
Met
CAT
[ENA]
¡û
>W1910399388
FUUZ01000016
Bacillota
Virgibacillus dokdonensis Marseille-P2545 [FUUZ]
1893934
1894010
+
Met
CAT
[ENA]
¡û
>W1910437852
FVZA01000007
Bacillota
Oceanobacillus timonensis Marseille-P3532 [FVZA]
783395
783319
-
Met
CAT
[ENA]
¡û
>W1910469536
FWYO01000011
Bacillota
Oceanobacillus senegalensis Marseille-P3587 [FWYO]
378552
378628
+
Met
CAT
[ENA]
¡û
>W1910469553
FWYO01000013
Bacillota
Oceanobacillus senegalensis Marseille-P3587 [FWYO]
169960
169887
-
Met
CAT
[ENA]
¡û
>W1910498889
FXXM01000009
Bacillota
Paucisalibacillus globulus PG [FXXM]
82151
82075
-
Met
CAT
[ENA]
¡û
>W1910546769
FZMZ01000005
Bacillota
Virgibacillus ndiopensis Marseille-P3835 [FZMZ]
741941
741865
-
Met
CAT
[ENA]
¡û
>W1910896716
NFZX01000006
Bacillota
Virgibacillus dokdonensis AK90 [NFZX]
104770
104846
+
Met
CAT
[ENA]
¡û
>W1910940464
NJAQ01000003
Bacillota
Terribacillus goriensis DSM 18252 [NJAQ]
1908697
1908621
-
Met
CAT
[ENA]
¡û
>W1911143685
NPBD01000002
Bacillota
Terribacillus saccharophilus Feb-03 [NPBD]
708133
708057
-
Met
CAT
[ENA]
¡û
>W1911143740
NPBE01000010
Bacillota
Terribacillus saccharophilus Jan-04 [NPBE]
187
263
+
Met
CAT
[ENA]
¡û
>W1911143833
NPBF01000419
Bacillota
Virgibacillus sp. 7505 [NPBF]
107
31
-
Met
CAT
[ENA]
¡û
>W1911143881
NPBH01000013
Bacillota
Terribacillus saccharophilus 7509 [NPBH]
186
262
+
Met
CAT
[ENA]
¡û
>W1911143990
NPBJ01000005
Bacillota
Terribacillus saccharophilus Jan-17 [NPBJ]
9951
9875
-
Met
CAT
[ENA]
¡û
>W1911144038
NPBK01000003
Bacillota
Terribacillus saccharophilus 7517-W [NPBK]
721503
721427
-
Met
CAT
[ENA]
¡û
>W1911144133
NPBL01000063
Bacillota
Terribacillus saccharophilus 7518 [NPBL]
187
263
+
Met
CAT
[ENA]
¡û
>W1911144176
NPBM01000103
Bacillota
Terribacillus saccharophilus Jan-20 [NPBM]
109
185
+
Met
CAT
[ENA]
¡û
>W1911144290
NPBP01000007
Bacillota
Terribacillus saccharophilus 7521 [NPBP]
9960
9884
-
Met
CAT
[ENA]
¡û
>W1911144582
NPBV01000003
Bacillota
Terribacillus saccharophilus 7528 [NPBV]
312820
312744
-
Met
CAT
[ENA]
¡û
>W1911159691
NPMS01000001
Bacillota
Virgibacillus indicus IO3-P2-C2 [NPMS]
418230
418306
+
Met
CAT
[ENA]
¡û
>W1911159853
NPMW01000009
Bacillota
Virgibacillus profundi P3-B8 [NPMW]
133427
133503
+
Met
CAT
[ENA]
¡û
>W1911161517
NPOA01000009
Bacillota
Virgibacillus profundi IO3-P3-H5 [NPOA]
133427
133503
+
Met
CAT
[ENA]
¡û
>W1911173321
NQFP01000081
Bacillota
Terribacillus sp. 7520-G [NQFP]
100
24
-
Met
CAT
[ENA]
¡û
>W1911493180
OBEK01000002
Bacillota
Terribacillus aidingensis CGMCC 1.8913 [OBEK]
767830
767754
-
Met
CAT
[ENA]
¡û
>W1911504177
OESV01000001
Bacillota
Bacillus sp. Marseille-P3661 [OESV]
1034265
1034341
+
Met
CAT
[ENA]
¡û
>W1911737811
QTSZ01000037
Bacillota
Ornithinibacillus gellani LJ137 [QTSZ]
240775
240699
-
Met
CAT
[ENA]
¡û
>W1911748477
QWEH01000004
Bacillota
Oceanobacillus profundus DSM 18246 [QWEH]
350107
350183
+
Met
CAT
[ENA]
¡û
>W1810144880
PIOC01000014
Bacillota
Oceanobacillus arenosus CAU 1183 [PIOC]
214918
214842
-
Met
CAT
[ENA]
¡û
>W1810144941
PIOD01000001
Bacillota
Oceanobacillus chungangensis CAU 1051 [PIOD]
1799
1872
+
Met
CAT
[ENA]
¡û
>W1810658877
QJJQ01000007
Bacillota
Pseudogracilibacillus auburnensis DSM 28556 [QJJQ]
17280
17204
-
Met
CAT
[ENA]
¡û
>W1810679846
QKRG01000018
Bacillota
Bacilli bacterium VT-841 [QKRG]
8334
8410
+
Met
CAT
[ENA]
¡û
>W1810679883
QKRG01000052
Bacillota
Bacilli bacterium VT-841 [QKRG]
1015
939
-
Met
CAT
[ENA]
¡û
>W1810680048
QKRI01000002
Bacillota
Bacilli bacterium VT-005 [QKRI]
86534
86458
-
Met
CAT
[ENA]
¡û
>W1810680119
QKRI01000052
Bacillota
Bacilli bacterium VT-005 [QKRI]
898
822
-
Met
CAT
[ENA]
¡û
>W1810745353
QOWH01000082
Bacillota
Bacilli bacterium VT-88 [QOWH]
724
648
-
Met
CAT
[ENA]
¡û
>W1810745443
QOWH01000220
Bacillota
Bacilli bacterium VT-88 [QOWH]
721
645
-
Met
CAT
[ENA]
¡û
>W1810745470
QOWH01000303
Bacillota
Bacilli bacterium VT-88 [QOWH]
8284
8360
+
Met
CAT
[ENA]
¡û
>W1810745483
QOWI01000002
Bacillota
Bacilli bacterium VT-124 [QOWI]
159748
159824
+
Met
CAT
[ENA]
¡û
>W1810745553
QOWI01000057
Bacillota
Bacilli bacterium VT-124 [QOWI]
18000
18076
+
Met
CAT
[ENA]
¡û
>C151017821
CP007161
Bacillota
Virgibacillus sp. SK37 [CP007161]
1799498
1799574
+
Met
CAT
[Ensembl]
¡û
>C151038953
CP008876
Bacillota
Terribacillus goriensis MP602 [CP008876]
1761343
1761267
-
Met
CAT
[Ensembl]
¡û
>W1510071275
CDGG01000001
Bacillota
Oceanobacillus oncorhynchi Oc5 [CDGG]
4098397
4098321
-
Met
CAT
[ENA]
¡û
>W1511586504
LAZH01000005
Bacillota
Bacilli bacterium VT-13-104 [LAZH]
159864
159940
+
Met
CAT
[ENA]
¡û
>W1511586553
LAZH01000072
Bacillota
Bacilli bacterium VT-13-104 [LAZH]
724
648
-
Met
CAT
[ENA]
¡û
>W11150970
AEWH01000046
Bacillota
Ornithinibacillus scapharcae TW25 [AEWH]
55144
55068
-
Met
CAT
[ENA]
¡û
>W1511640190
LDPV02000036
Bacillota
Ornithinibacillus contaminans DSM 22953 [LDPV]
186291
186215
-
Met
CAT
[ENA]
¡û
>W1511640384
LDUE01000029
Bacillota
Ornithinibacillus californiensis DSM 16628 [LDUE]
177
253
+
Met
CAT
[ENA]
¡û
>W1511706275
LGTO01000007
Bacillota
Virgibacillus pantothenticus DSM 26 [LGTO]
2350486
2350410
-
Met
CAT
[ENA]
¡û
>W1610042058
BAXM01000029
Bacillota
Bacillus sp. JCM 19056 [BAXM]
30477
30551
+
Met
CAT
[ENA]
¡û
>W1610043357
BAZS01000002
Bacillota
Virgibacillus halodenitrificans JCM 12304 [BAZS]
183374
183450
+
Met
CAT
[ENA]
¡û
>W1610057510
BBXV01000043
Bacillota
Oceanobacillus picturae [BBXV]
5015
4939
-
Met
CAT
[ENA]
¡û
>W1610067862
BCQW01000001
Bacillota
Amphibacillus sediminis NBRC 103570 [BCQW]
231530
231454
-
Met
CAT
[ENA]
¡û
>C131000103
AP012050
Bacillota
Amphibacillus xylanus NBRC 15112 [AP012050]
1185704
1185780
+
Met
CAT
[Ensembl]
¡û
>W1610501668
FLKH01000012
Bacillota
Gracilibacillus timonensis Marseille-P2481 [FLKH]
817537
817613
+
Met
CAT
[ENA]
¡û
>W1610617345
LGTK01000021
Bacillota
Oceanobacillus caeni [LGTK]
44387
44463
+
Met
CAT
[ENA]
¡û
>W1610617374
LGTK01000029
Bacillota
Oceanobacillus caeni [LGTK]
36548
36624
+
Met
CAT
[ENA]
¡û
>W1610855853
LQNF01000043
Bacillota
Oceanobacillus damuensis [LQNF]
22332
22256
-
Met
CAT
[ENA]
¡û
>W1611014186
LYCS01000002
Bacillota
Oceanobacillus sp. Castelsardo [LYCS]
531861
531786
-
Met
CAT
[ENA]
¡û
>W1611014274
LYCS01000015
Bacillota
Oceanobacillus sp. Castelsardo [LYCS]
1265
1189
-
Met
CAT
[ENA]
¡û
>W1710039152
BAXM01000029
Bacillota
Bacillus sp. JCM 19056 [BAXM]
30477
30551
+
Met
CAT
[ENA]
¡û
>W1710040517
BAZS01000002
Bacillota
Virgibacillus halodenitrificans JCM 12304 [BAZS]
183374
183450
+
Met
CAT
[ENA]
¡û
>W1710054209
BBXV01000043
Bacillota
Oceanobacillus picturae [BBXV]
5015
4939
-
Met
CAT
[ENA]
¡û
>W1710065235
BCQW01000001
Bacillota
Amphibacillus sediminis NBRC 103570 [BCQW]
231530
231454
-
Met
CAT
[ENA]
¡û
>W1710495138
FLKH01000012
Bacillota
Gracilibacillus timonensis Marseille-P2481 [FLKH]
817537
817613
+
Met
CAT
[ENA]
¡û
>W1710512000
FMZB01000007
Bacillota
Terribacillus halophilus [FMZB]
216699
216775
+
Met
CAT
[ENA]
¡û
>W1710546325
FOCD01000001
Bacillota
Terribacillus saccharophilus [FOCD]
374226
374302
+
Met
CAT
[ENA]
¡û
>W1710547960
FODJ01000001
Bacillota
Amphibacillus marinus [FODJ]
342336
342260
-
Met
CAT
[ENA]
¡û
>W1710551900
FOGL01000001
Bacillota
Gracilibacillus ureilyticus [FOGL]
466422
466346
-
Met
CAT
[ENA]
¡û
>W1710552932
FOHE01000017
Bacillota
Oceanobacillus limi [FOHE]
321
245
-
Met
CAT
[ENA]
¡û
>W1710586349
FQXD01000001
Bacillota
Virgibacillus chiguensis [FQXD]
266643
266567
-
Met
CAT
[ENA]
¡û
>W1710599418
FTOS01000001
Bacillota
Virgibacillus pantothenticus [FTOS]
75995
76071
+
Met
CAT
[ENA]
¡û
>W1710742932
LGTK01000021
Bacillota
Oceanobacillus caeni [LGTK]
44387
44463
+
Met
CAT
[ENA]
¡û
>W1710742961
LGTK01000029
Bacillota
Oceanobacillus caeni [LGTK]
36548
36624
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK