This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200581 (70 seq.)
>W1710862987
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
1563676
1563752
+
Met
CAT
[ENA]
¡û
>W1710877370
LMQA01000003
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
289692
289616
-
Met
CAT
[ENA]
¡û
>W131170110
ARFH01000015
Actinomycetota
Parafrankia elaeagni BMG5.12 [ARFH]
154668
154592
-
Met
CAT
[ENA]
¡û
>W131170129
ARFH01000072
Actinomycetota
Parafrankia elaeagni BMG5.12 [ARFH]
6692
6616
-
Met
CAT
[ENA]
¡û
>W1711938070
NAQL01000002
Actinomycetota
Bifidobacterium longum [NAQL]
154449
154525
+
Met
CAT
[ENA]
¡û
>C009566
CP000249
Actinomycetota
Frankia casuarinae CcI3 [CP000249]
4530226
4530150
-
Met
CAT
[Ensembl]
¡û
>WENV180136495
OATN01000029
[OATN] human gut metagenome; faeces
2567
2493
-
fMet
CAT
[ENA]
¢þ
>WENV180180272
OAWK01000029
[OAWK] human gut metagenome; faeces
2127
2053
-
fMet
CAT
[ENA]
¢þ
>WENV180412308
OBVA01000614
[OBVA] human gut metagenome; faeces
2111
2037
-
fMet
CAT
[ENA]
¢þ
>WENV180420394
OBVO01002744
[OBVO] human gut metagenome; faeces
4729
4803
+
fMet
CAT
[ENA]
¢þ
>WENV180426800
OBVZ01000587
[OBVZ] human gut metagenome; faeces
2186
2112
-
fMet
CAT
[ENA]
¢þ
>WENV180487223
OBZO01000063
[OBZO] human gut metagenome; faeces
87070
87144
+
fMet
CAT
[ENA]
¢þ
>WENV180491334
OBZV01001203
[OBZV] human gut metagenome; faeces
252
178
-
fMet
CAT
[ENA]
¢þ
>WENV180495613
OCAB01000132
[OCAB] human gut metagenome; faeces
26967
26893
-
fMet
CAT
[ENA]
¢þ
>WENV180504216
OCAN01000861
[OCAN] human gut metagenome; faeces
15206
15280
+
fMet
CAT
[ENA]
¢þ
>WENV180690898
OCZS010034527
[OCZS] soil metagenome; soil
1707
1633
-
fMet
CAT
[ENA]
¢þ
>WENV181116546
OEFA01017509
[OEFA] human gut metagenome; human gut
357
431
+
fMet
CAT
[ENA]
¢þ
>WENV181189407
OEOF01037593
[OEOF] activated sludge metagenome; Activated Sludge
178
104
-
fMet
CAT
[ENA]
¢þ
>WENV181393913
OFRY01003452
[OFRY] human gut metagenome; human gut
3868
3794
-
fMet
CAT
[ENA]
¢þ
>WENV181425757
OGCQ01001075
[OGCQ] human gut metagenome; human gut
37026
36952
-
fMet
CAT
[ENA]
¢þ
>WENV181459106
OGEK01002936
[OGEK] metagenome; Human gut stool
2082
2008
-
fMet
CAT
[ENA]
¢þ
>W141195309
AYTZ01000031
Actinomycetota
Frankia sp. CcI6 [AYTZ]
50718
50794
+
Met
CAT
[ENA]
¡û
>WENV182410086
OIFK01000043
[OIFK] human gut metagenome; stool
38927
39001
+
fMet
CAT
[ENA]
¢þ
>WENV182485590
OIRQ01000562
[OIRQ] human gut metagenome; human gut
3730
3656
-
fMet
CAT
[ENA]
¢þ
>WENV182495169
OITA01000771
[OITA] human gut metagenome; human gut
4149
4223
+
fMet
CAT
[ENA]
¢þ
>WENV182515548
OIWN01001475
[OIWN] human gut metagenome; faeces
9535
9461
-
fMet
CAT
[ENA]
¢þ
>WENV182797981
OJTD01000179
[OJTD] human gut metagenome; human gut
1654
1580
-
fMet
CAT
[ENA]
¢þ
>WENV182811701
OJXL01004046
[OJXL] human gut metagenome; human gut
179
105
-
fMet
CAT
[ENA]
¢þ
>WENV182947736
OKVN01000034
[OKVN] human gut metagenome; human gut
1890
1816
-
fMet
CAT
[ENA]
¢þ
>WENV182989417
OLAI01023744
[OLAI] human gut metagenome; human gut
197
123
-
fMet
CAT
[ENA]
¢þ
>C08001639
CP000605
Actinomycetota
Bifidobacterium longum DJO10A [CP000605]
1321171
1321245
+
Met
CAT
[Ensembl]
¡û
>WENV183145689
OLOM01000696
[OLOM] human gut metagenome; faeces
23361
23435
+
fMet
CAT
[ENA]
¢þ
>WENV183158997
OLOU01000554
[OLOU] human gut metagenome; faeces
28101
28027
-
fMet
CAT
[ENA]
¢þ
>WENV183306801
OLTB01001876
[OLTB] human gut metagenome; faeces
501
427
-
fMet
CAT
[ENA]
¢þ
>WENV183435947
OMCC01000148
[OMCC] human gut metagenome; feces
9
83
+
fMet
CAT
[ENA]
¢þ
>WENV183563418
OOBX01000175
[OOBX] human gut metagenome; human gut
9244
9170
-
fMet
CAT
[ENA]
¢þ
>WENV170571076
FLOH01000065
[FLOH] marine metagenome; water
183605
183681
+
Met
CAT
[ENA]
¢þ
>WENV170571628
FLOH01000239
[FLOH] marine metagenome; water
52505
52579
+
Met
CAT
[ENA]
¢þ
>WENV170572067
FLOH01000508
[FLOH] marine metagenome; water
83094
83020
-
Met
CAT
[ENA]
¢þ
>WENV170572939
FLOH01001544
[FLOH] marine metagenome; water
23745
23669
-
Met
CAT
[ENA]
¢þ
>C181218261
LT576032
Actinomycetota
Propionibacterium freudenreichii [LT576032]
1422271
1422345
+
Met
CAT
-
¡û
>C181218593
LT593929
Actinomycetota
Propionibacterium freudenreichii [LT593929]
1410675
1410749
+
Met
CAT
-
¡û
>C181219262
LT618780
Actinomycetota
Propionibacterium freudenreichii [LT618779, LT618780]
1397197
1397271
+
Met
CAT
-
¡û
>C181219659
LT618790
Actinomycetota
Propionibacterium freudenreichii [LT618789, LT618790]
1513249
1513323
+
Met
CAT
-
¡û
>C181232172
LT996886
Actinomycetota
Tessaracoccus timonensis Marseille-P59951 [LT996886]
2648705
2648631
-
Met
CAT
-
¡û
>C191180477
CP040634
Actinomycetota
Acidipropionibacterium acidipropionici FAM 19036 [CP040634]
1283654
1283578
-
Met
CAT
-
¡û
>C191180478
CP040634
Actinomycetota
Acidipropionibacterium acidipropionici FAM 19036 [CP040634]
1283460
1283384
-
Met
CAT
-
¡û
>W141771714
JOHI01003727
Actinomycetota
Streptomyces sp. NRRL B-2790 [JOHI]
1173
1249
+
Met
CAT
[ENA]
¡û
>W1910377731
FUKQ01000032
Actinomycetota
Luteococcus japonicus LSP_Lj1 [FUKQ]
210909
210985
+
Met
CAT
[ENA]
¡û
>W1911076480
NMVN01000016
Actinomycetota
Enemella evansiae NML 061049 [NMVN]
234552
234628
+
Met
CAT
[ENA]
¡û
>W1911076504
NMVO01000012
Actinomycetota
Enemella evansiae NML 030167 [NMVO]
232733
232809
+
Met
CAT
[ENA]
¡û
>W1810160988
PJEA01000006
Actinomycetota
Bifidobacterium longum APC1472 [PJEA]
194882
194808
-
Met
CAT
[ENA]
¡û
>W1810675413
QKKY01000049
Actinomycetota
Aeromicrobium sp. IBM16_104W [QKKY]
6430
6506
+
Met
CAT
[ENA]
¡û
>W1810792565
QRJB01000004
Actinomycetota
Bifidobacterium pseudocatenulatum AM20-1 [QRJB]
136455
136381
-
Met
CAT
[ENA]
¡û
>W1810805597
QRTZ01000003
Actinomycetota
Bifidobacterium pseudocatenulatum AF26-1 [QRTZ]
138684
138610
-
Met
CAT
[ENA]
¡û
>W1810815768
QSBG01000001
Actinomycetota
Bifidobacterium longum AF05-16 [QSBG]
326760
326686
-
Met
CAT
[ENA]
¡û
>W1510063281
CDAC01000002
Actinomycetota
Propionibacterium freudenreichii CIRM-BIA 527 [CDAC]
7517
7593
+
Met
CAT
[ENA]
¡û
>W1511540069
JZDQ01000245
Actinomycetota
Nocardioides luteus BAFB [JZDQ]
6496
6570
+
Met
CAT
[ENA]
¡û
>W1511540076
JZDQ01000343
Actinomycetota
Nocardioides luteus BAFB [JZDQ]
2134
2060
-
Met
CAT
[ENA]
¡û
>W121069987
AJWA01000096
Actinomycetota
Frankia sp. QA3 [AJWA]
27110
27186
+
Met
CAT
[ENA]
¡û
>W1610049584
BBFC01000815
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
297
373
+
Met
CAT
[ENA]
¡û
>W1610163573
FAOZ01000004
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
115421
115347
-
Met
CAT
[ENA]
¡û
>W1610725333
LMET01000001
Actinomycetota
Aeromicrobium sp. Root472D3 [LMET]
1563676
1563752
+
Met
CAT
[ENA]
¡û
>W1610739716
LMQA01000003
Actinomycetota
Geodermatophilus sp. Leaf369 [LMQA]
289692
289616
-
Met
CAT
[ENA]
¡û
>W1710045983
BBFC01000815
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
297
373
+
Met
CAT
[ENA]
¡û
>W1710165240
FAOZ01000004
Actinomycetota
Parafrankia irregularis DSM 45899 [FAOZ]
115421
115347
-
Met
CAT
[ENA]
¡û
>W1710520356
FNFN01000008
Actinomycetota
Nocardioides sp. YR527 [FNFN]
169125
169051
-
Met
CAT
[ENA]
¡û
>W1710520357
FNFN01000008
Actinomycetota
Nocardioides sp. YR527 [FNFN]
168897
168823
-
Met
CAT
[ENA]
¡û
>W1710530719
FNOZ01000001
Actinomycetota
Modestobacter sp. DSM 44400 [FNOZ]
59667
59591
-
Met
CAT
[ENA]
¡û
>W1710552655
FOGZ01000005
Actinomycetota
Propionibacterium cyclohexanicum [FOGZ]
22386
22310
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK