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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.200860 (35 seq.)
>W1711312281
MASS01000098
Bacillota
Desulfosporosinus sp. BG [MASS]
6164
6240
+
Arg
ACG
[ENA]
¡û
>W1711342431
MCHF01000002
Bacillota
Dehalobacter sp. TeCB1 [MCHF]
169940
170016
+
Arg
ACG
[ENA]
¡û
>W1711510592
MLBF01000097
Bacillota
Desulfosporosinus metallidurans OL [MLBF]
5798
5874
+
Arg
ACG
[ENA]
¡û
>W1711926253
NADJ01000003
Bacillota
Desulfosporosinus sp. FKB [NADJ]
6402
6478
+
Arg
ACG
[ENA]
¡û
>W1711932739
NAHZ01000019
Bacillota
Desulfosporosinus sp. FKA [NAHZ]
1388
1312
-
Arg
ACG
[ENA]
¡û
>W131162548
AQYY01000019
Bacillota
Dehalobacter sp. FTH1 [AQYY]
25410
25334
-
Arg
ACG
[ENA]
¡û
>WENV180263122
OBEQ011446696
[OBEQ] groundwater metagenome; groundwater
486
410
-
Arg
ACG
[ENA]
¢þ
>WENV180342765
OBLJ01124779
[OBLJ] soil metagenome; Clay
326
250
-
Arg
ACG
[ENA]
¢þ
>W141088295
AUUR01000120
Bacillota
Dehalobacter sp. UNSWDHB [AUUR]
17455
17379
-
Arg
ACG
[ENA]
¡û
>W141246577
CANE01000031
Bacillota
Dehalobacter restrictus E1 [CANE]
14781
14857
+
Arg
ACG
[ENA]
¡û
>W141246659
CANF01002296
Bacillota
Dehalobacter sp. E1 x Sedimentibacter sp. B4 coculture E1 X Sedimentibacter sp. B4 coculture [CANF]
5448
5372
-
Arg
ACG
[ENA]
¡û
>WENV183673786
ORJL011317769
[ORJL] groundwater metagenome; groundwater
1207
1283
+
Arg
ACG
[ENA]
¢þ
>WENV170658860
JUEG02001262
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
1863
1787
-
Arg
ACG
[ENA]
¢þ
>WENV170658889
JUEG02001293
[JUEG] rock porewater metagenome; Opalinus Clay rock BIC-A1 borehole
22220
22296
+
Arg
ACG
[ENA]
¢þ
>WENV170784328
MCHG01000828
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
5397
5473
+
Arg
ACG
[ENA]
¢þ
>C141011745
CP007033
Bacillota
Dehalobacter restrictus DSM 9455 PER-K23; DSM 9455 [CP007033]
1153616
1153692
+
Arg
ACG
[Ensembl]
¡û
>W1911608713
PNXX01000013
Bacillota
Dehalobacter sp. 14DCB1 [PNXX]
23270
23346
+
Arg
ACG
[ENA]
¡û
>W1911613543
POSF01000006
Bacillota
Dehalobacter sp. 12DCB1 [POSF]
25130
25054
-
Arg
ACG
[ENA]
¡û
>W1810047159
OMOF01000012
Bacillota
Candidatus Desulfosporosinus infrequens SbF1 Peat soil MAG SbF1 [OMOF]
5125
5201
+
Arg
ACG
[ENA]
¡û
>C151016334
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2174365
2174289
-
Arg
ACG
[Ensembl]
¡û
>C151016348
CP007032
Bacillota
Desulfitobacterium metallireducens DSM 15288 853-15A [CP007032]
2172607
2172531
-
Arg
ACG
[Ensembl]
¡û
>W1511187149
JMGA01000078
Bacillota
Desulfosporosinus sp. HMP52 [JMGA]
22199
22275
+
Arg
ACG
[ENA]
¡û
>W1511327358
JQID01000098
Bacillota
Desulfosporosinus sp. Tol-M [JQID]
2842
2766
-
Arg
ACG
[ENA]
¡û
>W1511533699
JYNH01000154
Bacillota
Desulfosporosinus sp. I2 [JYNH]
9712
9788
+
Arg
ACG
[ENA]
¡û
>W1511646043
LDZY01000036
Bacillota
Desulfosporosinus acididurans M1 [LDZY]
5163
5239
+
Arg
ACG
[ENA]
¡û
>W11177298
AGAF01000251
Bacillota
Desulfosporosinus sp. OT [AGAF]
1404
1328
-
Arg
ACG
[ENA]
¡û
>W11181374
AGJA01000017
Bacillota
Desulfosporosinus meridiei DSM 13257 [AGJA]
1754
1678
-
Arg
ACG
[ENA]
¡û
>W11181431
AGJB01000029
Bacillota
Desulfitobacterium metallireducens DSM 15288 [AGJB]
1088
1012
-
Arg
ACG
[ENA]
¡û
>C121005973
CP003108
Bacillota
Desulfosporosinus orientis DSM 765 [CP003108]
3774195
3774119
-
Arg
ACG
[Ensembl]
¡û
>C121014773
CP003629
Bacillota
Desulfosporosinus meridiei DSM 13257 [CP003629]
102370
102446
+
Arg
ACG
[Ensembl]
¡û
>C121014850
CP003639
Bacillota
Desulfosporosinus acidiphilus SJ4 [CP003639]
103703
103779
+
Arg
ACG
[Ensembl]
¡û
>W121010493
AGJG01000050
Bacillota
Desulfosporosinus acidiphilus SJ4 [AGJG]
3479
3555
+
Arg
ACG
[ENA]
¡û
>C131008538
CP003869
Bacillota
Dehalobacter sp. DCA [CP003869]
2085054
2084978
-
Arg
ACG
[Ensembl]
¡û
>C131008589
CP003870
Bacillota
Dehalobacter sp. CF [CP003870]
2114842
2114766
-
Arg
ACG
[Ensembl]
¡û
>W1710586653
FQXJ01000018
Bacillota
Desulfosporosinus lacus DSM 15449 [FQXJ]
29332
29408
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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