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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.20088 (109 seq.)
>W1711326724
MBFW01000064
Gammaproteobacteria
Shewanella algae [MBFW]
94604
94513
-
Ser
GCT
[ENA]
¡û
>W1711360891
MDKA01000050
Gammaproteobacteria
Shewanella algae [MDKA]
25893
25984
+
Ser
GCT
[ENA]
¡û
>W1711934401
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
25236
25145
-
Ser
GCT
[ENA]
¡û
>W1711934405
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
24749
24658
-
Ser
GCT
[ENA]
¡û
>W1712080437
NGZL01000012
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
35104
35195
+
Ser
GCT
[ENA]
¡û
>W1712080442
NGZL01000012
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
35711
35802
+
Ser
GCT
[ENA]
¡û
>WENV013003
AACY020356171
Marine microbial communities from Global Ocean Sampling (GOS)
6769
6676
-
Ser
GCT
[ENA]
>WENV013009
AACY020356171
Marine microbial communities from Global Ocean Sampling (GOS)
7498
7405
-
Ser
GCT
[ENA]
>C019777
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
1271639
1271730
+
Ser
GCT
[Ensembl]
¡û
>C019783
CP000507
Gammaproteobacteria
Shewanella amazonensis SB2B [CP000507]
1272281
1272372
+
Ser
GCT
[Ensembl]
¡û
>C022226
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1332641
1332732
+
Ser
GCT
[Ensembl]
¡û
>C022232
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1333369
1333460
+
Ser
GCT
[Ensembl]
¡û
>C022328
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1327447
1327538
+
Ser
GCT
[Ensembl]
¡û
>C022334
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1328179
1328270
+
Ser
GCT
[Ensembl]
¡û
>C022424
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1403855
1403946
+
Ser
GCT
[Ensembl]
¡û
>C022430
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1404587
1404678
+
Ser
GCT
[Ensembl]
¡û
>C022661
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
1416121
1416212
+
Ser
GCT
[Ensembl]
¡û
>C022666
CP000606
Gammaproteobacteria
Shewanella loihica PV-4 [CP000606]
1416665
1416756
+
Ser
GCT
[Ensembl]
¡û
>C022971
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3567965
3567874
-
Ser
GCT
[Ensembl]
¡û
>C022977
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
3567232
3567141
-
Ser
GCT
[Ensembl]
¡û
>WENV180311268
OBJT01191778
[OBJT] soil metagenome; soil
241
150
-
Ser
GCT
[ENA]
¢þ
>W141171231
AXZL01000069
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
987
896
-
Ser
GCT
[ENA]
¡û
>W141171233
AXZL01000069
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
764
673
-
Ser
GCT
[ENA]
¡û
>W141227847
BALM01000011
Gammaproteobacteria
Shewanella marina JCM 15074 [BALM]
141936
142027
+
Ser
GCT
[ENA]
¡û
>W141227971
BALO01000022
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
82508
82417
-
Ser
GCT
[ENA]
¡û
>W141227975
BALO01000040
Gammaproteobacteria
Shewanella algae JCM 21037 [BALO]
40253
40344
+
Ser
GCT
[ENA]
¡û
>W141276207
JADP01000016
Gammaproteobacteria
Shewanella sp. 38A_GOM-205m [JADP]
30114
30205
+
Ser
GCT
[ENA]
¡û
>C181057559
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4898288
4898379
+
Ser
GCT
-
¡û
>C181057565
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
4899019
4899110
+
Ser
GCT
-
¡û
>C181062994
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3436665
3436574
-
Ser
GCT
-
¡û
>C181063000
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3435936
3435845
-
Ser
GCT
-
¡û
>C191015575
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
23517
23426
-
Ser
GCT
-
¡û
>C191015581
CP018456
Gammaproteobacteria
Shewanella algae CCU101 [CP018456]
22881
22790
-
Ser
GCT
-
¡û
>W141520100
JGVI01000072
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
54450
54359
-
Ser
GCT
[ENA]
¡û
>W141520106
JGVI01000072
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
53719
53628
-
Ser
GCT
[ENA]
¡û
>W09102782
AAIN01000008
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
96338
96429
+
Ser
GCT
[ENA]
¡û
>W09102788
AAIN01000008
Gammaproteobacteria
Shewanella amazonensis SB2B [AAIN]
96980
97071
+
Ser
GCT
[ENA]
¡û
>W09104025
AALH01000011
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
115673
115764
+
Ser
GCT
[ENA]
¡û
>W09104031
AALH01000011
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
116401
116492
+
Ser
GCT
[ENA]
¡û
>W09104509
AALS01000053
Gammaproteobacteria
Shewanella loihica PV-4 [AALS]
24090
23999
-
Ser
GCT
[ENA]
¡û
>W09104615
AALX01000056
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
20373
20282
-
Ser
GCT
[ENA]
¡û
>C191107847
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3600957
3600866
-
Ser
GCT
-
¡û
>C191107853
CP033575
Gammaproteobacteria
Shewanella algae KC-Na-R1 [CP033575]
3600321
3600230
-
Ser
GCT
-
¡û
>C191148770
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1213042
1212951
-
Ser
GCT
-
¡û
>C191148774
CP036200
Gammaproteobacteria
Shewanella maritima D4-2 [CP036200]
1212616
1212525
-
Ser
GCT
-
¡û
>C191155914
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
2980281
2980190
-
Ser
GCT
-
¡û
>C191155919
CP037951
Gammaproteobacteria
Parashewanella tropica MEBiC05444 [CP037951]
2979752
2979661
-
Ser
GCT
-
¡û
>C191205226
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3515214
3515305
+
Ser
GCT
-
¡û
>C191205232
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3515942
3516033
+
Ser
GCT
-
¡û
>W141801960
JPEO01000003
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
363727
363636
-
Ser
GCT
[ENA]
¡û
>W141801965
JPEO01000003
Gammaproteobacteria
Shewanella mangrovi YQH10 [JPEO]
363217
363126
-
Ser
GCT
[ENA]
¡û
>W1910644982
LVCY01000002
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
205830
205739
-
Ser
GCT
[ENA]
¡û
>W1910644988
LVCY01000002
Gammaproteobacteria
Shewanella algae ACCC [LVCY]
205194
205103
-
Ser
GCT
[ENA]
¡û
>W1910645105
LVDH01000003
Gammaproteobacteria
Shewanella algae AC [LVDH]
66460
66551
+
Ser
GCT
[ENA]
¡û
>W1910645111
LVDH01000003
Gammaproteobacteria
Shewanella algae AC [LVDH]
67096
67187
+
Ser
GCT
[ENA]
¡û
>W1910645201
LVDK01000015
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
93067
92976
-
Ser
GCT
[ENA]
¡û
>W1910645207
LVDK01000015
Gammaproteobacteria
Shewanella algae SYT4 [LVDK]
92431
92340
-
Ser
GCT
[ENA]
¡û
>W1910645303
LVDU01000016
Gammaproteobacteria
Shewanella algae YHL [LVDU]
1255
1164
-
Ser
GCT
[ENA]
¡û
>W1910645309
LVDU01000016
Gammaproteobacteria
Shewanella algae YHL [LVDU]
619
528
-
Ser
GCT
[ENA]
¡û
>W1910905498
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
25826
25735
-
Ser
GCT
[ENA]
¡û
>W1910905505
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
25083
24992
-
Ser
GCT
[ENA]
¡û
>W1910905507
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
24860
24769
-
Ser
GCT
[ENA]
¡û
>W1910905509
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
24637
24546
-
Ser
GCT
[ENA]
¡û
>W1910905511
NGVS01000004
Gammaproteobacteria
Shewanella carassii 08MAS2251 [NGVS]
24414
24323
-
Ser
GCT
[ENA]
¡û
>W1910913794
NHRI01000016
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
7525
7434
-
Ser
GCT
[ENA]
¡û
>W1910913800
NHRI01000016
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
6798
6707
-
Ser
GCT
[ENA]
¡û
>W1910927050
NIJK01000022
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
388
297
-
Ser
GCT
[ENA]
¡û
>W1910927088
NIJK01000039
Gammaproteobacteria
Shewanella indica KJW27 [NIJK]
89
180
+
Ser
GCT
[ENA]
¡û
>W1910927212
NIJL01000040
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
83395
83304
-
Ser
GCT
[ENA]
¡û
>W1910927218
NIJL01000040
Gammaproteobacteria
Shewanella algae 20-23R [NIJL]
82759
82668
-
Ser
GCT
[ENA]
¡û
>W1910927255
NIJM01000039
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
11336
11427
+
Ser
GCT
[ENA]
¡û
>W1910927257
NIJM01000039
Gammaproteobacteria
Shewanella chilikensis JC5 [NIJM]
11531
11622
+
Ser
GCT
[ENA]
¡û
>W1911812314
QZEI01000017
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
74578
74487
-
Ser
GCT
[ENA]
¡û
>W1911812319
QZEI01000017
Gammaproteobacteria
Parashewanella curva C51 [QZEI]
74047
73956
-
Ser
GCT
[ENA]
¡û
>W1810073437
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
156781
156690
-
Ser
GCT
[ENA]
¡û
>W1810073444
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
155956
155865
-
Ser
GCT
[ENA]
¡û
>W1810585868
QFDC01000017
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
30874
30965
+
Ser
GCT
[ENA]
¡û
>W1810585874
QFDC01000017
Gammaproteobacteria
Shewanella algae Sh392 [QFDC]
31510
31601
+
Ser
GCT
[ENA]
¡û
>W1810587752
QFLG01000029
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
72422
72513
+
Ser
GCT
[ENA]
¡û
>W1810587783
QFLG01000081
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
805
714
-
Ser
GCT
[ENA]
¡û
>W1810671693
QJSY01000032
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
29630
29539
-
Ser
GCT
[ENA]
¡û
>W1810671699
QJSY01000032
Gammaproteobacteria
Shewanella chilikensis JC5 [QJSY]
28995
28904
-
Ser
GCT
[ENA]
¡û
>W1810786550
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
467546
467455
-
Ser
GCT
[ENA]
¡û
>W1810786557
QRCS01000013
Gammaproteobacteria
Shewanella corallii A687 [QRCS]
466784
466693
-
Ser
GCT
[ENA]
¡û
>WENV003392
AACY020092195
Marine microbial communities from Global Ocean Sampling (GOS)
24394
24487
+
Ser
GCT
[ENA]
>WENV003398
AACY020092195
Marine microbial communities from Global Ocean Sampling (GOS)
25125
25218
+
Ser
GCT
[ENA]
>W1510077696
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
938277
938186
-
Ser
GCT
[ENA]
¡û
>W1510077698
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
937973
937882
-
Ser
GCT
[ENA]
¡û
>W1510077704
CDQH01000018
Gammaproteobacteria
Shewanella algae MARS 14 [CDQH]
937337
937246
-
Ser
GCT
[ENA]
¡û
>W1511302137
JPII01000029
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
190721
190812
+
Ser
GCT
[ENA]
¡û
>W1511302142
JPII01000029
Gammaproteobacteria
Shewanella sp. cp20 [JPII]
191265
191356
+
Ser
GCT
[ENA]
¡û
>W1511306525
JPMA01000012
Gammaproteobacteria
Shewanella algae C6G3 [JPMA]
126
217
+
Ser
GCT
[ENA]
¡û
>W1511403522
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
813992
814083
+
Ser
GCT
[ENA]
¡û
>W1511477938
JWGX01000025
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
64991
64900
-
Ser
GCT
[ENA]
¡û
>W1511477944
JWGX01000025
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
64356
64265
-
Ser
GCT
[ENA]
¡û
>W1511477948
JWGX01000025
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
63947
63856
-
Ser
GCT
[ENA]
¡û
>W1511477950
JWGX01000025
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
63724
63633
-
Ser
GCT
[ENA]
¡û
>W1511477952
JWGX01000025
Gammaproteobacteria
Shewanella sp. ECSMB14102 [JWGX]
63501
63410
-
Ser
GCT
[ENA]
¡û
>W11169923
AFOZ01000035
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
33449
33358
-
Ser
GCT
[ENA]
¡û
>W11169925
AFOZ01000036
Gammaproteobacteria
Shewanella sp. HN-41 [AFOZ]
306
215
-
Ser
GCT
[ENA]
¡û
>W121103301
AKZL01000009
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
17083
16992
-
Ser
GCT
[ENA]
¡û
>W1610617909
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
6626
6535
-
Ser
GCT
[ENA]
¡û
>W1610617915
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
5895
5804
-
Ser
GCT
[ENA]
¡û
>W1710692497
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
179087
179178
+
Ser
GCT
[ENA]
¡û
>W1710692503
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
179818
179909
+
Ser
GCT
[ENA]
¡û
>W1710706700
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
303248
303157
-
Ser
GCT
[ENA]
¡û
>W1710706706
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
302517
302426
-
Ser
GCT
[ENA]
¡û
>W1710744084
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
6626
6535
-
Ser
GCT
[ENA]
¡û
>W1710744090
LGYY01000263
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
5895
5804
-
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK