This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.201033 (10 seq.)
>C025538
BA000039
Cyanobacteriota
Thermosynechococcus vestitus BP-1 [BA000039]
375063
374990
-
Arg
ACG
[Ensembl]
¡û
>WENV180015050
FQKF010292233
[FQKF] soil metagenome; Soil
75
-1
-
Arg
ACG
[ENA]
¢þ
>WENV181412066
OGCI01077623
[OGCI] hot springs metagenome; Hot spring water
224
297
+
Arg
ACG
[ENA]
¢þ
>WENV181414767
OGCL01001300
[OGCL] hot springs metagenome; Hot spring water
20774
20847
+
Arg
ACG
[ENA]
¢þ
>WENV181415098
OGCL01004031
[OGCL] hot springs metagenome; Hot spring water
441
364
-
Arg
ACG
[ENA]
¢þ
>C181030483
CP018092
Cyanobacteriota
Thermostichus lividus PCC 6715 [CP018092]
2372850
2372777
-
Arg
ACG
-
¡û
>C191001229
AP018202
Cyanobacteriota
Thermostichus vulcanus NIES-2134 [AP018202]
436741
436666
-
Arg
ACG
-
¡û
>C191085241
CP032152
Cyanobacteriota
Thermosynechococcus vestitus E542 [CP032152]
214238
214163
-
Arg
ACG
-
¡û
>C141007951
CP006735
Cyanobacteriota
Thermosynechococcus sp. NK55a [CP006735]
753814
753739
-
Arg
ACG
-
¡û
>C131004306
CP003558
Cyanobacteriota
Synechococcus sp. PCC 6312 [CP003558]
1738409
1738484
+
Arg
ACG
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK