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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.201433 (64 seq.)
>WENV010740
AACY020290729
Marine microbial communities from Global Ocean Sampling (GOS)
688
612
-
Ile
GAT
[ENA]
>WENV010796
AACY020292492
Marine microbial communities from Global Ocean Sampling (GOS)
1057
981
-
Ile
GAT
[ENA]
>W131037618
AMFF01000439
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMFF]
96
172
+
Ile
GAT
[ENA]
¡û
>W131038461
AMGC01000254
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
17767
17691
-
Ile
GAT
[ENA]
¡û
>W131038477
AMGC01000341
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
3728
3652
-
Ile
GAT
[ENA]
¡û
>W131038480
AMGC01000378
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [AMGC]
9972
10048
+
Ile
GAT
[ENA]
¡û
>W131195196
ASSK01000419
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [ASSK]
587
511
-
Ile
GAT
[ENA]
¡û
>C171026479
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
1308105
1308181
+
Ile
GAT
-
¡û
>C171026495
CP013757
Gammaproteobacteria
Piscirickettsia salmonis AY6492A [CP013757]
2647546
2647622
+
Ile
GAT
-
¡û
>C171026535
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
1438733
1438809
+
Ile
GAT
-
¡û
>C171026551
CP013762
Gammaproteobacteria
Piscirickettsia salmonis PM21567A [CP013762]
2778167
2778243
+
Ile
GAT
-
¡û
>C171026633
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
574672
574748
+
Ile
GAT
-
¡û
>C171026665
CP013773
Gammaproteobacteria
Piscirickettsia salmonis PM37984A [CP013773]
1927661
1927585
-
Ile
GAT
-
¡û
>C171026724
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
1797014
1796938
-
Ile
GAT
-
¡û
>C171026743
CP013778
Gammaproteobacteria
Piscirickettsia salmonis PM51819A [CP013778]
355530
355454
-
Ile
GAT
-
¡û
>C171026780
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
1795039
1794963
-
Ile
GAT
-
¡û
>C171026798
CP013781
Gammaproteobacteria
Piscirickettsia salmonis PM49811B [CP013781]
1113097
1113021
-
Ile
GAT
-
¡û
>C171026836
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
1795307
1795231
-
Ile
GAT
-
¡û
>C171026854
CP013786
Gammaproteobacteria
Piscirickettsia salmonis PM58386B [CP013786]
1113352
1113276
-
Ile
GAT
-
¡û
>C171026889
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
2450179
2450103
-
Ile
GAT
-
¡û
>C171026907
CP013791
Gammaproteobacteria
Piscirickettsia salmonis AY6297B [CP013791]
1774249
1774173
-
Ile
GAT
-
¡û
>C171026923
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
931847
931923
+
Ile
GAT
-
¡û
>C171026941
CP013796
Gammaproteobacteria
Piscirickettsia salmonis AY6532B [CP013796]
1607760
1607836
+
Ile
GAT
-
¡û
>C171026998
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
3001336
3001260
-
Ile
GAT
-
¡û
>C171027016
CP013801
Gammaproteobacteria
Piscirickettsia salmonis PM22180B [CP013801]
2326903
2326827
-
Ile
GAT
-
¡û
>C171027060
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
1795115
1795039
-
Ile
GAT
-
¡û
>C171027078
CP013806
Gammaproteobacteria
Piscirickettsia salmonis PM31429B [CP013806]
1113156
1113080
-
Ile
GAT
-
¡û
>C171027113
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
2450183
2450107
-
Ile
GAT
-
¡û
>C171027131
CP013811
Gammaproteobacteria
Piscirickettsia salmonis AY3864B [CP013811]
1774252
1774176
-
Ile
GAT
-
¡û
>C171027169
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
2450182
2450106
-
Ile
GAT
-
¡û
>C171027187
CP013816
Gammaproteobacteria
Piscirickettsia salmonis AY3800B [CP013816]
1774251
1774175
-
Ile
GAT
-
¡û
>C171027222
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
3002570
3002494
-
Ile
GAT
-
¡û
>C171027240
CP013821
Gammaproteobacteria
Piscirickettsia salmonis PM25344B [CP013821]
2327921
2327845
-
Ile
GAT
-
¡û
>WENV180209801
OBAL01024274
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
222
298
+
Ile
GAT
[ENA]
¢þ
>WENV180359231
OBNR01021588
[OBNR] marine metagenome; Seawater_00002010_00002149
156
232
+
Ile
GAT
[ENA]
¢þ
>WENV181120309
OEFJ01022893
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
189
265
+
Ile
GAT
[ENA]
¢þ
>WENV181120311
OEFJ01022952
[OEFJ] human metagenome; G_DNA_Attached/Keratinized gingiva
322
246
-
Ile
GAT
[ENA]
¢þ
>W141221204
AZYQ02000134
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
16942
17018
+
Ile
GAT
[ENA]
¡û
>W141221232
AZYQ02000217
Gammaproteobacteria
Piscirickettsia salmonis AUSTRAL-005 [AZYQ]
8098
8174
+
Ile
GAT
[ENA]
¡û
>WENV183716113
PDWI01287196
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
658
582
-
Ile
GAT
[ENA]
¢þ
>WENV183716396
PDWI01305544
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
671
747
+
Ile
GAT
[ENA]
¢þ
>WENV183716403
PDWI01306250
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
764
688
-
Ile
GAT
[ENA]
¢þ
>C191116641
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
3005855
3005779
-
Ile
GAT
-
¡û
>C191116660
CP033937
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [CP033937]
1555498
1555422
-
Ile
GAT
-
¡û
>W1911652760
QBEV01000669
Gammaproteobacteria
Piscirickettsiaceae bacterium NZ-RLO2 [QBEV]
26
102
+
Ile
GAT
[ENA]
¡û
>W1810054368
PDFD01000034
Gammaproteobacteria
Piscirickettsia salmonis S-GIM [PDFD]
3516
3592
+
Ile
GAT
[ENA]
¡û
>C151086955
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
185455
185531
+
Ile
GAT
[Ensembl]
¡û
>C151086995
CP011849
Gammaproteobacteria
Piscirickettsia salmonis LF-89 = ATCC VR-1361 [CP011849]
2764275
2764199
-
Ile
GAT
[Ensembl]
¡û
>C151095308
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
3001334
3001258
-
Ile
GAT
-
¡û
>C151095326
CP012508
Gammaproteobacteria
Piscirickettsia salmonis PM32597B1 [CP012508]
2326899
2326823
-
Ile
GAT
-
¡û
>W1511336320
JRAD02000046
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
16943
17019
+
Ile
GAT
[ENA]
¡û
>W1511336332
JRAD02000058
Gammaproteobacteria
Piscirickettsia salmonis B1-32597 [JRAD]
8077
8153
+
Ile
GAT
[ENA]
¡û
>W1511337056
JRAV02000047
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
13219
13295
+
Ile
GAT
[ENA]
¡û
>W1511337066
JRAV02000068
Gammaproteobacteria
Piscirickettsia salmonis A1-15972 [JRAV]
5811
5887
+
Ile
GAT
[ENA]
¡û
>W1511346905
JRHP01000417
Gammaproteobacteria
Piscirickettsia salmonis EM-90 [JRHP]
116
192
+
Ile
GAT
[ENA]
¡û
>C161042012
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
176887
176963
+
Ile
GAT
[Ensembl]
¡û
>C161042028
CP012413
Gammaproteobacteria
Piscirickettsia salmonis PM15972A1 [CP012413]
1516349
1516425
+
Ile
GAT
[Ensembl]
¡û
>C161062483
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
2974052
2973976
-
Ile
GAT
-
¡û
>C161062501
CP013944
Gammaproteobacteria
Piscirickettsia salmonis PSCGR01 [CP013944]
2299591
2299515
-
Ile
GAT
-
¡û
>C161063150
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
3020829
3020753
-
Ile
GAT
-
¡û
>C161063168
CP013975
Gammaproteobacteria
Piscirickettsia salmonis CGR02 [CP013975]
2344598
2344522
-
Ile
GAT
-
¡û
>WENV069130
AACY023754122
Marine microbial communities from Global Ocean Sampling (GOS)
159
235
+
Ile
GAT
[ENA]
>WENV069506
AACY023769867
Marine microbial communities from Global Ocean Sampling (GOS)
1289
1211
-
Ile
GAT
[ENA]
>WENV076731
AACY024108090
Marine microbial communities from Global Ocean Sampling (GOS)
189
113
-
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK