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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.201760 (14 seq.)
>WENV180292650
OBIV01555591
[OBIV] soil metagenome; Clay
170
97
-
Ile
GAT
[ENA]
¢þ
>WENV180354964
OBNE01038643
[OBNE] groundwater metagenome; groundwater
147
71
-
Ile
GAT
[ENA]
¢þ
>WENV181191901
OEPS010277023
[OEPS] soil metagenome; soil
314
388
+
Ile
GAT
[ENA]
¢þ
>WENV171003324
NNBT01004783
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
559
483
-
Ile
GAT
[ENA]
¢þ
>W1911705891
QORU01000011
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60010 [QORU]
307209
307133
-
Ile
GAT
[ENA]
¡û
>W1911708709
QOZQ01000016
Alphaproteobacteria
Phyllobacteriaceae bacterium SYSU D60012 [QOZQ]
103622
103698
+
Ile
GAT
[ENA]
¡û
>C151099534
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
34470
34546
+
Ile
GAT
[Ensembl]
¡û
>C151099535
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
43016
43092
+
Ile
GAT
[Ensembl]
¡û
>C151099536
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
55011
55087
+
Ile
GAT
[Ensembl]
¡û
>C151099604
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
1350897
1350821
-
Ile
GAT
[Ensembl]
¡û
>C151099621
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
51512
51436
-
Ile
GAT
[Ensembl]
¡û
>C151099622
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
38881
38805
-
Ile
GAT
[Ensembl]
¡û
>C151099623
HE663493
Alphaproteobacteria
Pararhodospirillum photometricum DSM 122 [HE663493]
27779
27703
-
Ile
GAT
[Ensembl]
¡û
>WENV077315
AAFX01022008
Soil microbial communities from Minnesota Farm
495
571
+
Ile
GAT
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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