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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.201799 (28 seq.)
>W1711050744
LRRQ01000076
Verrucomicrobiota
Opitutaceae bacterium TSB47 [LRRQ]
402316
402392
+
Met
CAT
[ENA]
¡û
>W1711228677
LXWT01000044
Verrucomicrobiota
Opitutaceae bacterium TAV3 [LXWT]
17323
17247
-
Met
CAT
[ENA]
¡û
>W1711228721
LXWU01000056
Verrucomicrobiota
Opitutaceae bacterium TAV4 [LXWU]
17319
17243
-
Met
CAT
[ENA]
¡û
>C171046049
CP016094
Verrucomicrobiota
Lacunisphaera limnophila IG16b [CP016094]
662471
662547
+
Met
CAT
-
¡û
>WENV180256015
OBEQ010776862
[OBEQ] groundwater metagenome; groundwater
2590
2666
+
fMet
CAT
[ENA]
¢þ
>WENV180292882
OBIV01686881
[OBIV] soil metagenome; Clay
5
81
+
fMet
CAT
[ENA]
¢þ
>WENV181416465
OGCL01089887
[OGCL] hot springs metagenome; Hot spring water
336
412
+
fMet
CAT
[ENA]
¢þ
>W08011160
ABSI01000010
Verrucomicrobiota
Verrucomicrobiae bacterium DG1235 [ABSI]
619344
619420
+
Met
CAT
[ENA]
¡û
>WENV182547462
OJBS01007619
[OJBS] seawater metagenome; Sea water
1043
967
-
fMet
CAT
[ENA]
¢þ
>C08007086
CP001032
Verrucomicrobiota
Opitutus terrae PB90-1 [CP001032]
5791503
5791430
-
Met
CAT
[Ensembl]
¡û
>WENV183660540
ORJL010031594
[ORJL] groundwater metagenome; groundwater
1168
1244
+
fMet
CAT
[ENA]
¢þ
>WENV183666353
ORJL010543109
[ORJL] groundwater metagenome; groundwater
590
514
-
fMet
CAT
[ENA]
¢þ
>WENV183667157
ORJL010620737
[ORJL] groundwater metagenome; groundwater
2607
2531
-
fMet
CAT
[ENA]
¢þ
>WENV183675050
ORJL011463265
[ORJL] groundwater metagenome; groundwater
61
137
+
fMet
CAT
[ENA]
¢þ
>WENV183682895
ORMF010501806
[ORMF] groundwater metagenome; groundwater
773
849
+
fMet
CAT
[ENA]
¢þ
>WENV183748302
PPFU01027246
[PPFU] hypolithon metagenome; Antarctic Hypolithon
2670
2594
-
fMet
CAT
[ENA]
¢þ
>WENV170564315
CZKI01000074
[CZKI] soil metagenomic genome assembly CiPEHR-AK-2010-FBin.1, contig; soil
27884
27960
+
Met
CAT
[ENA]
¢þ
>WENV170707131
LNAP01013480
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2862
2938
+
Met
CAT
[ENA]
¢þ
>C181079148
CP023344
Verrucomicrobiota
Nibricoccus aquaticus HZ-65 [CP023344]
1441412
1441336
-
Met
CAT
-
¡û
>W1910744845
MIDS01001036
Verrucomicrobiota
Verrucomicrobia bacterium RIFCSPLOWO2_12_FULL_64_8 [MIDS]
132
56
-
Met
CAT
[ENA]
¡û
>W1810487917
QAYX01000023
Verrucomicrobiota
Opitutus sp. ER46 [QAYX]
122313
122237
-
Met
CAT
[ENA]
¡û
>C151016758
CP007053
Verrucomicrobiota
Opitutaceae bacterium TAV5 [CP007053]
5532878
5532802
-
Met
CAT
[Ensembl]
¡û
>C151078843
CP011265
Verrucomicrobiota
Verrucomicrobia bacterium IMCC26134 [CP011265]
2808373
2808449
+
Met
CAT
[Ensembl]
¡û
>W121010402
AGJF01000001
Verrucomicrobiota
Opitutaceae bacterium TAV5 [AGJF]
304472
304396
-
Met
CAT
[ENA]
¡û
>W121034599
AHKS02000048
Verrucomicrobiota
Opitutaceae bacterium TAV1 [AHKS]
252003
252079
+
Met
CAT
[ENA]
¡û
>W1610891873
LRRQ01000076
Verrucomicrobiota
Opitutaceae bacterium TSB47 [LRRQ]
402316
402392
+
Met
CAT
[ENA]
¡û
>W1611012594
LXWT01000044
Verrucomicrobiota
Opitutaceae bacterium TAV3 [LXWT]
17323
17247
-
Met
CAT
[ENA]
¡û
>W1611012638
LXWU01000056
Verrucomicrobiota
Opitutaceae bacterium TAV4 [LXWU]
17319
17243
-
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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